Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq6840 98.7 9e-16 seq6838 98.7 9e-16 seq6839 96.9 3e-15 seq5292 89.7 4e-13 >seq6840 Length=32352404 Score = 98.7 bits (108), Expect = 9e-16 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 23986 ACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGG 24045 ||||||||||| | || || ||||| | || || || | |||||| | || |||||| Sbjct 311138 ACAAAATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATTACCTTGGAGGTCGAGC 311197 Query 24046 CCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCG 24105 || |||||||||||| | ||||| ||||| |||||||| || || || || | Sbjct 311198 CCTCTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCACCAG 311257 Query 24106 ATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAAC-GTCAGCGA 24163 |||| ||| | |||| | || ||||||||| || || ||| ||| | | ||| ||| Sbjct 311258 ATCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACTCTGTC--CGA 311315 Query 24164 TTATAACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || |||||||| || || || || | || || ||| Sbjct 311316 CTACAACATTCAGAAGGAGTCCACTTTGCACTTGGTG 311352 Score = 86.0 bits (94), Expect = 5e-12 Identities = 156/228 (68%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 132200 TGTTGATTTACTATTTGATATTCACCCGATAAGACTCTTCGTACGTACAAATTACTAGTA 132259 || || || |||| |||| | || || || || |||| || | ||| | || |||| Sbjct 31472805 TGGTGGTTCACTACTTGAAACTCGCCAGACAATACTCGTCTTGTGTAAATGTTTGAAGTA 31472746 Query 132260 AACGGCTCGAACGATTCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCATGTAG 132319 | ||||||||||| || || || ||||||||||| ||||| | ||| || |||||| Sbjct 31472745 TAAGGCTCGAACGACTCATTATTGCCCAATATTTGCGCTGTAGATGCTGTAGGCATGGGA 31472686 Query 132320 GCAATCAATAATGAATTGCGCAGCCCGTGTATGGCCATTTGCCGTTTAAGCTCGTCCCAG 132379 || || | ||| ||||| | | |||||| || || |||||| | | |||| Sbjct 31472685 GCGATGAGTAAAGAATTTCTGACACCGTGTTGCGCTATAGATTTTTTAAGAGCATTCCAG 31472626 Query 132380 TTCCACAGATCATTCGATTGAGAGATATTCCACAAATCAAACTGTAAA 132427 | ||| ||||| | | | || | ||||||| |||| |||| ||| Sbjct 31472625 TCCCAAAGATC---TGTTGGTGATTTGTTCCACATATCATACTGCAAA 31472581 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 || |||||| | ||||| ||||| |||| || || | || || | || ||||| | Sbjct 15336349 CACAATGCAGATCTTTGTTAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAACC 15336290 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || ||||||||| | |||||| ||||| ||||||||||| || ||||| || Sbjct 15336289 GTCGGATACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGA 15336230 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| ||| | || || | | ||||||||| | ||||||| | | | ||| || Sbjct 15336229 TCAGCAGCGTCTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCCGACTA 15336170 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| |||||||| || || | || || ||| Sbjct 15336169 CAACATCCAAAAAGAGTCAACCTTGCACTTGGTG 15336136 >seq6838 Length=24764193 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | ||||| ||| | || ||| | || || ||| | | Sbjct 2124264 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACCATCACCTTGGAGGTGGAGCCATCC 2124323 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| ||| | || || |||||| ||||| ||||| || || || ||||| Sbjct 2124324 GATACCATTGAGAATGTGAAGGCTAAGATTCAGGACAAGGAAGGTATTCCCCCAGATCAG 2124383 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || |||||||||||| ||||||| | | | | | ||||| ||| Sbjct 2124384 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGCCGCACCTTGTCTGATTACAAC 2124443 Query 24171 ATTCAAAAAGAATCTAC 24187 ||||| || ||||| || Sbjct 2124444 ATTCAGAAGGAATCGAC 2124460 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | || || ||||| || || ||||| | || || | || || ||| | Sbjct 2122208 CAAAATGCAGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACTCTGGAGGTTGAGCC 2122267 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 ||| ||||| ||| | || || |||||| ||||| ||||| || || || || Sbjct 2122268 TTCCGATACCATTGAGAATGTGAAGGCTAAGATTCAGGACAAGGAAGGTATTCCCCCAGA 2122327 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| ||| | ||||| | || |||||||||||| ||||||| | | | | || || Sbjct 2122328 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACCTTGTCTGACTA 2122387 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 || || || || ||||| || ||||||| || Sbjct 2122388 CAATATCCAGAAGGAATCGACCCTTCATTTGGT 2122420 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | ||||| ||| | || ||| | || || ||| | | Sbjct 2123124 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACCATCACCTTGGAGGTGGAGCCATCC 2123183 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| ||| | || || || ||| ||||| ||||| || || || || || Sbjct 2123184 GATACCATTGAGAATGTGAAGGCTAAAATTCAGGACAAGGAAGGTATTCCCCCAGACCAG 2123243 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || |||||||||||| ||||||| | | | | ||||| ||| Sbjct 2123244 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACCTTGTCTGATTACAAC 2123303 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 ||||| || ||||| || ||||| Sbjct 2123304 ATTCAGAAGGAATCGACCCTTCAT 2123327 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | ||||| ||| | || ||| | || || ||| | | Sbjct 2124492 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACCATCACCTTGGAGGTGGAGCCATCC 2124551 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| ||| | || || || ||| ||||| ||||| || || || ||||| Sbjct 2124552 GATACCATTGAGAATGTGAAGGCTAAAATTCAGGACAAGGAAGGTATTCCCCCAGATCAG 2124611 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || ||||||||||| ||||||| | | | | | ||||| ||| Sbjct 2124612 CAGCGTCTGATCTTCGCTGGCAAGCAACTGGAAGATGGCCGCACCTTGTCTGATTACAAC 2124671 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || || || ||||| || |||| || || Sbjct 2124672 ATCCAGAAGGAATCGACCCTTCACTTGGT 2124700 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | ||||| || | || || | || || ||| | | Sbjct 2124948 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCTTCC 2125007 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| ||| | || || |||||| ||||| ||||| || || || ||||| Sbjct 2125008 GATACCATTGAGAATGTGAAGGCTAAGATTCAGGACAAGGAAGGTATTCCCCCAGATCAG 2125067 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | | |||||||||||| ||||||| | | | | || || ||| Sbjct 2125068 CAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGTCGCACCCTGTCTGACTACAAC 2125127 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||| || ||||| ||||||| || Sbjct 2125128 ATTCAAAAGGAGTCTACCCTTCATTTGGT 2125156 >seq6839 Length=26866924 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 104587 CGTTTGTATTCGCCTACTCGTTTTTCaaaaaaaTTAGTCTTGCCCTCCAGAGAAATATTA 104646 |||| |||||||| ||| ||| || || || ||||||||||| ||||| || || | Sbjct 3409424 CGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGCGAGATCATC 3409483 Query 104647 TTCATAAATTCGAAAGGATTCAAAGTCTTAAAATATTTTTCGTA-GCCAAGCTCGATCAA 104705 | |||||| ||| |||||| || || | ||||| | | || || || | ||| Sbjct 3409484 TCCATAAAGGTGAATGGATTCTTCGTATT-GTAGATTTTGCCAACACCGAGTTCCACCAA 3409542 Query 104706 CAGTCGATCCGCCACAAATTCGATGTACTCGCACATAGAATGTGC-ATTCATGCCCAGCA 104764 ||| |||||||| |||||||| || |||| | |||| |||| | ||||||||| | || Sbjct 3409543 CAGACGATCCGCAACAAATTCAATATACTGGGACAT-CAATGCACAATTCATGCCAATCA 3409601 Query 104765 TTGCGACGGGTAAAGCGTTAGTaaaaaaaTCTTTCTCGATG 104805 |||||| | ||| | || | ||| |||| ||| ||| Sbjct 3409602 AGTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATG 3409642 >seq5292 Length=4599 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | ||||| || | || || | || || ||| | | Sbjct 1622 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCTTCC 1681 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| ||| | || || |||||| ||||| ||||| || || || ||||| Sbjct 1682 GATACCATTGAGAATGTGAAGGCTAAGATTCAGGACAAGGAAGGTATTCCCCCAGATCAG 1741 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | | |||||||||||| ||||||| | | | | || || ||| Sbjct 1742 CAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGTCGCACCCTGTCTGACTACAAC 1801 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||| || ||||| ||||||| || Sbjct 1802 ATTCAAAAGGAGTCTACCCTTCATTTGGT 1830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429900154220355