Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq6838 91.5 1e-13 seq5292 91.5 1e-13 seq6836 87.8 1e-12 seq6840 86.0 5e-12 >seq6838 Length=24764193 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 16706 TACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCG 16765 || || || || || | |||||||| ||| || || ||||||||||| ||||||||||| Sbjct 2125177 TAACCGCCACGCAGACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCA 2125118 Query 16766 GCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACA 16825 | || ||| | || |||| ||| ||||| ||| | || || ||||| || || Sbjct 2125117 GACAGGGTGCGACCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGG 2125058 Query 16826 GGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 || | || || ||||| ||| | |||||| | | | || ||| |||||| Sbjct 2125057 GGAATACCTTCCTTGTCCTGAATCTTAGCCTTCACATTCTCAATGGTATCGGAAGGCTCC 2124998 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || || ||||| || || || || || ||||| Sbjct 2124997 ACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 2124948 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || || || ||||| || || |||||||| | || ||| | || Sbjct 2122879 AGGACCAGATGAAGGGTCGATTCCTTCTGGATATTGTAGTCAGACAAGGTGCGACCATCT 2122820 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| ||| ||||| || | ||||| ||||||||||| || | || || ||||| Sbjct 2122819 TCCAGTTGCTTGCCGGCGAAGATAAGACGCTGTTGGTCTGGGGGAATACCTTCCTTGTCC 2122760 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | |||||| | | | || ||| |||||| |||| |||||||||| Sbjct 2122759 TGAATCTTAGCCTTCACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTT 2122700 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || ||||| || || || || || ||||| Sbjct 2122699 TTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 2122668 >seq5292 Length=4599 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 16706 TACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCG 16765 || || || || || | |||||||| ||| || || ||||||||||| ||||||||||| Sbjct 1851 TAACCGCCACGCAGACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCA 1792 Query 16766 GCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACA 16825 | || ||| | || |||| ||| ||||| ||| | || || ||||| || || Sbjct 1791 GACAGGGTGCGACCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGG 1732 Query 16826 GGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 || | || || ||||| ||| | |||||| | | | || ||| |||||| Sbjct 1731 GGAATACCTTCCTTGTCCTGAATCTTAGCCTTCACATTCTCAATGGTATCGGAAGGCTCC 1672 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || || ||||| || || || || || ||||| Sbjct 1671 ACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 1622 >seq6836 Length=4525533 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || || |||||||| || ||||||||||||| || || | ||| Sbjct 2204873 AGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCC 2204932 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| || | || || ||||| || || || | ||||| ||||| Sbjct 2204933 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCC 2204992 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| |||||| |||| |||||||| Sbjct 2204993 TGGATCTTGGC--CTTAACATTCTCAATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGG 2205050 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||| |||| || ||||| || |||||||| Sbjct 2205051 TTTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 2205084 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || || |||||||| || ||||||||||||| || || | ||| Sbjct 2205101 AGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCC 2205160 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| || | || || ||||| || || ||| | ||||| || || Sbjct 2205161 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATACCCTCCTTATCC 2205220 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| |||||| |||| |||||||| Sbjct 2205221 TGGATCTTGGC--CTTGACATTCTCAATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGG 2205278 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||| |||| || ||||| || |||||||| Sbjct 2205279 TTTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 2205312 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || || |||||||| || ||||||||||||| || || | ||| Sbjct 2205557 AGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCC 2205616 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| || | || || ||||| || || || | ||||| ||||| Sbjct 2205617 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCC 2205676 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| |||||| |||| |||||||| Sbjct 2205677 TGGATCTTGGC--CTTAACATTCTCAATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGG 2205734 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||| |||| || ||||| || |||||||| Sbjct 2205735 TTTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 2205768 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | || |||| |||| || |||||||| || ||||||||||||| | Sbjct 2204630 CCACCACGTAGACGGAGCACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 2204689 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||||| || ||||| || | || || ||||| || || || Sbjct 2204690 AGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGA 2204749 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || ||| || | | | ||||| |||||| Sbjct 2204750 ATACCCTCCTTGTCTTGGATCTTGGC--CTTAACATTTTCAATGGTGTCCGAGGGCTCGA 2204807 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||||||| || |||| || ||||| || |||||||| Sbjct 2204808 CCTCCAAGGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 2204856 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || || |||||||| || ||||||||||||| || || | ||| Sbjct 2205329 AGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCC 2205388 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| || | || || |||||||| || || | ||||| ||||| Sbjct 2205389 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCTGGGGGAATACCCTCCTTGTCC 2205448 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| ||| || |||| |||||||| Sbjct 2205449 TGGATCTTGGC--CTTAACATTCTCAATGGTGTCCGAGGGTTCGACCTCCAAGGTGATGG 2205506 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || |||| || ||||| || |||||||| Sbjct 2205507 TTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 2205540 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || || |||||||| || ||||||||||||| || || | ||| Sbjct 2205785 AGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCC 2205844 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| || | || || ||||| || || ||| | ||||| || || Sbjct 2205845 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATACCCTCCTTATCC 2205904 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| |||||| |||| |||||||| Sbjct 2205905 TGGATCTTGGC--CTTGACATTCTCAATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGG 2205962 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || |||| || ||||| || |||||||| Sbjct 2205963 TTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 2205996 >seq6840 Length=32352404 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/220 (69%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| |||| ||||||||||| || ||||||||||||| || || | ||| Sbjct 311354 AGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 311295 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| || | || | ||||| || || || | ||||||||||| Sbjct 311294 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGTGGGATTCCCTCTTTGTCC 311235 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| |||||| |||| ||| |||| Sbjct 311234 TGGATCTTGGC--CTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTAATGG 311177 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTA 16941 | || ||||| || ||||| || || || ||||||||||| Sbjct 311176 TCTTGCCGGTGAGAGTTTTAACGAAGATTTGCATTTTGTA 311137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405054225914590