Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq6840 574 6e-159 seq6839 206 3e-48 >seq6840 Length=32352404 Score = 574 bits (636), Expect = 6e-159 Identities = 1260/1871 (67%), Gaps = 30/1871 (2%) Strand=Plus/Minus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 |||||||| || | | | || ||||| || || ||||| ||||| || || || ||| Sbjct 31473138 GTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGA 31473079 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 || ||||| |||||||| || |||| ||| |||| | || || |||| | Sbjct 31473078 CCCGCTTTCCATGAATAAAAATGGATTGATGTTAATTTTCCATAATTGGGTTCAGCTACA 31473019 Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029 || ||||| | ||| ||||||||||| || || ||||| || || || |||||||||||| Sbjct 31473018 TGAATATTGAAAGACTGACTTTGATCAATAAACGCTCCTCTATCAGCCGCCATTTTTATA 31472959 Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG 62088 | | || || ||||||||| | ||||||||| || || | ||| |||| |||| Sbjct 31472958 GTTGATTTAACTGAAATTTCCCACACAGTTTTATACAAATCACG-AATTTCTTTAGGAAT 31472900 Query 62089 -GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 62145 | || |||| || || || |||| | || || || ||| || ||||| |||| Sbjct 31472899 AGATTCAATATTTTGTATTGAACCACGACTTGATATTATTTGATTTTTCATCTCGTCATC 31472840 Query 62146 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 62205 ||| || | || |||||| | | || | || | || ||||||||||| || || Sbjct 31472839 CCACAAATCAAGTTCAGTTAAATCACGGAGTAAGTGGTGGTTCACTACTTGAAACTCGCC 31472780 Query 62206 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 62265 ||||||||||| | |||||||| || ||||| || || | ||||||||||| || Sbjct 31472779 AGACAATACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTATTGCC 31472720 Query 62266 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62325 ||| ||||| || || ||||| || ||||| || || | | |||| |||||| | ||| Sbjct 31472719 CAATATTTGCGCTGTAGATGCTGTAGGCATGGGAGCGATGAGTAAAGAATTTCTGACACC 31472660 Query 62326 GTATGTTCTGATTTT-ATCTTTTA-GAGGTTCCCAATTCCAAAGATCCGACGGTACAACN 62383 || ||| | | | || ||||| ||| | ||| | ||||||||| | ||| Sbjct 31472659 GT--GTTGCGCTATAGATTTTTTAAGAGCATTCCAGTCCCAAAGATCTGTTGGTGATTTG 31472602 Query 62384 NNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTA 62442 || | ||| || || || | | || || || || || || || Sbjct 31472601 TTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTG-CCAACGTAAGTCTCATA 31472543 Query 62443 TGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 62502 |||||| || ||| ||| | ||||||||| || || || || || || || || ||||| Sbjct 31472542 TGGTCCATCTCTCTGAGCCAATTCACAACTGGCTTCCAAAGCTCCATAGTATATAGTTTC 31472483 Query 62503 GAAGATCTTCTTATTTA---GATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAG 62559 ||| |||| || ||||| || | ||||| | || || | | ||| | | Sbjct 31472482 GAAAATCTGCTGATTTAATAGAAAT---GCTTCACGACTTTCGTAGGAATACCGCATTAA 31472426 Query 62560 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62619 || || ||||| || || ||||| || |||||||| ||||| | || | |||||| Sbjct 31472425 TATTAATGCGTCCGCAAACCCTTGGACTCCAATACCAATAGGACGGTGACGTAAATTAGA 31472366 Query 62620 GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 62679 ||| ||||||||| | ||| || ||||| ||||| || |||||||| | ||| | Sbjct 31472365 TTTTTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTATTTAAGTTTTTCGT 31472306 Query 62680 AATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTATTACAAA 62736 || | ||| ||||| || || || ||| ||| | | | | | | ||||| Sbjct 31472305 AACGATTTTAGTTACATCTTTAAGCTTTTTAAAGTCATAAGATTTCTCCTGCGTCACAAA 31472246 Query 62737 CATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTG 62796 ||| || | ||| | || |||| |||||| || |||| |||| | ||| ||||| Sbjct 31472245 CATATTAAGTGCGATTGACGCCAAATTACACACAGCTATTTCATCTGGTGCCGAATATTC 31472186 Query 62797 TATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTT 62856 | ||| || ||||| |||||||| || || || ||||| | ||||||||| || || || Sbjct 31472185 AACTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTT 31472126 Query 62857 TTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTAT 62916 | ||||||| | |||||| | | ||| | ||||||||||| || | |||||||| || Sbjct 31472125 TCTGTTACAAGAGTCCTTAAATAACATGTAAGGAGTACCAGTCTCTACTTGAGATTCGAT 31472066 Query 62917 AATCGCTTTCCAGACGACTCGAGCCTTTATTA-TAGATTTGTATCTCTTTTCTCT--TTC 62973 || || ||| | | |||| || || | | |||| | ||| | |||| ||| Sbjct 31472065 GATGGCAAACCAAAGAGATTGAGCTTTAATAACTCGATTCG---CTCGTCCCTCTCGTTC 31472009 Query 62974 GTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTC 63033 ||| |||| | ||| || || || |||||||||| || ||||| |||| Sbjct 31472008 ATATTTGATATAGAGGTTTTCAAAATCTTCACCCCAAACATCTGGGAGGCCAGGGCATTT 31471949 Query 63034 ATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGG 63093 || ||||||||||| ||||| ||| | | | | | || ||||||||||| |||||||| Sbjct 31471948 ATGTGGACACATCAATGACCAGTCTTCATTAGCTTCAACACGTTTCATAAAAAGATCAGG 31471889 Query 63094 AATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 63153 ||||| | || | ||| ||||| | | | ||||||||| ||||| ||||| ||||| Sbjct 31471888 TATCCACAATGCAAAAAAGAGATCGCGTGCACGATGTTCCTCCTTTCCAGTATTTTTTTT 31471829 Query 63154 AAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCC 63213 ||| || | || | | | ||| || ||||| || |||| ||||| || | |||| Sbjct 31471828 AAGGTCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCCAGATATATAGCAAATGCTCC 31471769 Query 63214 AGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 63273 ||| | ||| || |||||||| | || | ||| |||||| | ||||| ||||| Sbjct 31471768 AGGTCTTTTACCACCGCCCTGATCAACATAGCGCGCGACATTATTAAATACTCTTAACAT 31471709 Query 63274 TGG-AATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAA 63332 ||| | |||| ||||| || || || || || || | || || | || | || |||| Sbjct 31471708 TGGTACTAAT-CCATTTGAAGTGCCGTTCGTTCCACAAATTGAGGTGCCTTTAGCTCGAA 31471650 Query 63333 TATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 63392 || || || || ||||| |||||| || || || | ||||||| ||| | Sbjct 31471649 TACAGTGAACATTAAGTCCAATTCCACCTGCCGACTTTGATATCATTGCGCATTGTTCAA 31471590 Query 63393 ACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGAC 63451 | | | | || || || || |||| || || ||||| |||||||| |||| Sbjct 31471589 CTGATTTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAA-AAGAAAACATGAAGAC 31471531 Query 63452 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTT 63511 | ||| ||||| | || | ||| ||| | || || || || |||||||| | Sbjct 31471530 AATTGTGGACGATTTGTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACGC 31471471 Query 63512 TCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACT 63571 ||||| || | |||||| || |||| || || || ||||| ||| || |||| Sbjct 31471470 TCAGATAGCAAATTGTAGGTTTCAACTGCAGAATCAATATCTTCGCCATGTATACCTATG 31471411 Query 63572 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAG 63631 ||||||||||||| || ||||| |||||||| | || || |||||||| | ||| Sbjct 31471410 GCGACACGCATTAGCAAATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAAA 31471351 Query 63632 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 63691 || || || | || || || ||||| ||||| ||| || || || || || ||| Sbjct 31471350 TACGACCGCTCAAGTGTCTTGAATCCAAAGTAGTTATATCCGAAATCGCGATCATATATA 31471291 Query 63692 ATAACCGAGTT 63702 ||| | ||||| Sbjct 31471290 ATAGCAGAGTT 31471280 >seq6839 Length=26866924 Score = 206 bits (228), Expect = 3e-48 Identities = 557/844 (66%), Gaps = 21/844 (2%) Strand=Plus/Plus Query 32361 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAAT 32420 || ||||| ||| ||||| || || ||| ||||| || ||||| || || || | Sbjct 3409415 ACGCCCATACGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGC 3409474 Query 32421 GATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAAT 32480 || || | ||||| || ||||||||| | ||| || ||||| || || | | Sbjct 3409475 GAGATCATCTCCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGT 3409534 Query 32481 TCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATT 32540 || | || | ||| || |||||||| ||||| ||||| | |||||||||| Sbjct 3409535 TCCACCAACAGACGATCCGCAACAAATTCAATATACTGGGACATCAATGCACAATTCATG 3409594 Query 32541 CCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCT 32600 || || | || || || ||||| | || ||||| ||||| ||||| | || || || Sbjct 3409595 CCAATCAAGTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCC 3409654 Query 32601 GTTATAATAGATCTTACTGTTTCT-TCAC---TCGGTGGATACAATAAATGTTTAAACAT 32656 | || ||||| | || | | |||| | || | | || ||||| ||||| Sbjct 3409655 GAGAT----GATCTCAATGATGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACAT 3409710 Query 32657 CAA-ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACG 32715 || ||| || || || || || | |||||||| | || || || ||||| || | Sbjct 3409711 CATCACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGG 3409769 Query 32716 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAA 32775 | || |||||||| || ||||| || || |||||||| || || ||||| ||| || Sbjct 3409770 TCAGACCGGGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAA 3409829 Query 32776 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--CTGTC 32833 |||| ||||| || || || || || ||||| | |||||| ||| | ||| || Sbjct 3409830 AGAAGATTCCCTCCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCGGCCTTCG 3409889 Query 32834 ATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 32892 ||| | |||| | |||||||||||||| || ||| |||||||| || | | Sbjct 3409890 ATGAAATCCAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAACGG 3409949 Query 32893 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 32952 |||| || ||||| | ||| | ||| ||| ||||||||| |||| | || | Sbjct 3409950 CATTGAACAGATAATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGT 3410009 Query 32953 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGG 33012 |||| ||||| || | || || ||||| |||||||| || ||||| || | ||| |||| Sbjct 3410010 ACATCTCCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCGG 3410069 Query 33013 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 33072 | || || || || | || || || | | ||| ||||| || || || || | Sbjct 3410070 TTATTTGCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGAAG 3410129 Query 33073 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA---- 33128 | ||||| || || | ||||| ||||| | |||| | | |||| | Sbjct 3410130 CGGCAAAGAAGGCGAGCACATGGGAGATAAAGTGGCGCTCGT----TATCAGTTAAACGT 3410185 Query 33129 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 33188 ||| || | | || ||||| | |||||| || ||||| ||||| ||||| ||||| Sbjct 3410186 GCCCAGTCGGTCAAGTCCTTAGAGAGATCCACCTCCTCCACAGTCCAGAATGAGGCCTCG 3410245 Query 33189 GCCT 33192 |||| Sbjct 3410246 GCCT 3410249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633577816543600