Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq6838 129 5e-25 seq6840 120 3e-22 seq5292 120 3e-22 seq6839 113 4e-20 seq6836 96.9 3e-15 >seq6838 Length=24764193 Score = 129 bits (142), Expect = 5e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| |||| || ||| ||||||| | || |||||| | || Sbjct 2122668 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACCATCACCTTGGAGGTGGAGCCATCC 2122727 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| ||||| | || | ||| ||||| ||||| ||||| || ||||| Sbjct 2122728 GATACCATTGAGAATGTGAAGGCTAAGATTCAG-GACAAGGAAGGTATTCCCCCAGACCA 2122786 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| |||| || |||||||| ||| | ||||||| |||||| || || ||||| Sbjct 2122787 ACAGCGTCTTATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACCTTGTCTGACTACAA 2122846 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || ||||| || || ||| | || || Sbjct 2122847 TATCCAGAAGGAATCGACCCTTCATCTGGTCCT 2122879 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| |||| || || ||||||| | || |||||| | || Sbjct 2124948 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCTTCC 2125007 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| ||||| | || | ||| ||||| ||||| ||||| || || || Sbjct 2125008 GATACCATTGAGAATGTGAAGGCTAAGATTCAG-GACAAGGAAGGTATTCCCCCAGATCA 2125066 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||||||||| ||| | ||||||| |||||| || || ||||| Sbjct 2125067 GCAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGTCGCACCCTGTCTGACTACAA 2125126 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| || || || || ||||| || || Sbjct 2125127 CATTCAAAAGGAGTCTACCCTTCATTTGGTACT 2125159 >seq6840 Length=32352404 Score = 120 bits (132), Expect = 3e-22 Identities = 159/218 (73%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 |||||||| || ||||| || || | || ||||| ||||||| | || || || || Sbjct 15336348 ACAATGCAGATCTTTGTTAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAACCG 15336289 Query 25056 TCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 || || || |||||| | || |||| || | || ||||||||||| ||||| || Sbjct 15336288 TCGGATACCATCGAG--AATGTCAAAGCCAAGATCCAG-GACAAAGAAGGAATTCCTCCA 15336232 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 || || ||||| | || ||||| ||||| ||||| ||||||| ||||||| | ||| Sbjct 15336231 GATCAGCAGCGTCTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCCGAC 15336172 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || |||||||| || || | || || ||||| Sbjct 15336171 TACAACATCCAAAAAGAGTCAACCTTGCACTTGGTGCT 15336134 >seq5292 Length=4599 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| |||| || || ||||||| | || |||||| | || Sbjct 1622 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCTTCC 1681 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| ||||| | || | ||| ||||| ||||| ||||| || || || Sbjct 1682 GATACCATTGAGAATGTGAAGGCTAAGATTCAG-GACAAGGAAGGTATTCCCCCAGATCA 1740 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||||||||| ||| | ||||||| |||||| || || ||||| Sbjct 1741 GCAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGTCGCACCCTGTCTGACTACAA 1800 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| || || || || ||||| || || Sbjct 1801 CATTCAAAAGGAGTCTACCCTTCATTTGGTACT 1833 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || || |||||||| || || ||||||| | || || ||| | || Sbjct 25 AATGCAGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACTCTGGAGGTTGAGCCTTC 84 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || ||| | ||| | || | ||| || || || || |||||||| || | Sbjct 85 CGATACCATTGAGAACGTTAAGGCCAAGATTCAA-GATAAGGAGGGAATTCCACCAGATC 143 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || ||||||||||| ||| | ||||||| |||||| || || |||| Sbjct 144 AGCAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGCCGCACTTTGTCTGACTACA 203 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| || || || || || || ||| | || || Sbjct 204 ATATCCAGAAGGAGTCGACCCTTCATCTGGTCCT 237 >seq6839 Length=26866924 Score = 113 bits (124), Expect = 4e-20 Identities = 204/293 (70%), Gaps = 8/293 (3%) Strand=Plus/Minus Query 50989 AACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTGCGTTCT 51048 ||||| ||||| ||||| ||||||||||| | || | ||||| || ||| || Sbjct 677737 AACTTGCGCTTGCAGCCTTGATAGTTCATATAGCGAATCTTACCAAATATCGCGCGCTCC 677678 Query 51049 TTGAACGGCCT--GTCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGTTAG 51106 || | |||| |||||| | || | || |||||||| ||||| || || || | Sbjct 677677 TTCCA--GCCTTGGTCGTGAATCCCACCGATGGACCACATGCAACCAACGTAGCCATTCG 677620 Query 51107 GATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCATGT 51166 ||||||| ||||||| ||||| | ||||| | |||||| ||| | ||| | ||| Sbjct 677619 GATCGCGTCCATCCAGACTGTACTTGTCGTTCAATAATATGCTATA-CTCAAGCGCTTGT 677561 Query 51167 --CTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTG 51224 | || | | ||||| || | ||| || |||||||| |||||||||| | ||||| Sbjct 677560 TCCGGCGTTTCG-GTCCACTCTAAAATCTTTTTGGCCCAATACATGCGCAGAAACCCGTG 677502 Query 51225 CATCTTGCCCTCGCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGT 51277 ||| ||||| || |||||| || ||||||||||||| ||||||| Sbjct 677501 CATTTTGCCTTCCTTGACCAGCTGCAGCTGGGCCGAGTTCCACAGATCGTCGT 677449 >seq6836 Length=4525533 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || ||| ||||||| | || || ||| | || Sbjct 2204856 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACCATCACCTTGGAGGTCGAGCCCTCG 2204797 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| || || ||||| || || || Sbjct 2204796 GACACCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAG 2204737 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || ||||| || | || |||| |||||| || ||| ||||| Sbjct 2204736 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAAC 2204677 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 || || || || || || | || || ||||| | ||| | || || ||||| Sbjct 2204676 ATCCAGAAGGAGTCTACTTTGCACTTGGTGCTCCGTCTACGTGGTGGTAATTA 2204624 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || ||| ||||||| | || || ||| | || Sbjct 2205084 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAAACCATCACCTTGGAGGTCGAGCCCTCG 2205025 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||| || || ||||| || || || Sbjct 2205024 GACACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 2204965 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || ||||| || | || |||| |||||| || ||| ||||| Sbjct 2204964 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAAC 2204905 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || ||| | || || Sbjct 2204904 ATCCAGAAGGAGTCGACCCTTCATCTGGTCCT 2204873 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || ||| ||||||| | || || || | || Sbjct 2205540 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACCATCACCTTGGAGGTCGAACCCTCG 2205481 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||| || || ||||| || || ||| Sbjct 2205480 GACACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAA 2205421 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || ||||| || | || |||| |||||| || ||| ||||| Sbjct 2205420 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAAC 2205361 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || ||| | || || Sbjct 2205360 ATCCAGAAGGAGTCGACCCTTCATCTGGTCCT 2205329 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || ||| ||||||| | || || ||| | || Sbjct 2205768 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAAACCATCACCTTGGAGGTCGAGCCCTCG 2205709 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||| || || ||||| || || || Sbjct 2205708 GACACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 2205649 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || ||||| || | || |||| |||||| || ||| ||||| Sbjct 2205648 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAAC 2205589 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || ||| | || || Sbjct 2205588 ATCCAGAAGGAGTCGACCCTTCATCTGGTCCT 2205557 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 24978 TAATT--TGTACAAAACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCA 25035 ||||| |||| | || ||| ||||| || || || ||||||||||| || || ||| Sbjct 2206475 TAATTACTGTAGACAAGAGAAATATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCA 2206416 Query 25036 TCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACA 25095 |||| | || || ||| | || ||||| || ||| | ||| || ||| |||| Sbjct 2206415 TCACTTTGGAGGTTGAGCCCTCGGACACCATTGAGAATGTTAAGGCCAAGATCCAAGACA 2206356 Query 25096 AAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG 25155 | || || ||||| || || || ||||| | || || || ||||| || | || |||| Sbjct 2206355 AGGAGGGTATTCCCCCAGATCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATG 2206296 Query 25156 ATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| || ||| ||||| || || || || || || || ||| | || || Sbjct 2206295 GACGCACTCTGTCCGACTACAACATCCAGAAGGAGTCGACCCTTCATCTGGTCCT 2206241 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || ||| ||||||| | || || ||| | || Sbjct 2205312 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAAACCATCACCTTGGAGGTCGAGCCCTCG 2205253 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| || || || || ||||| || || || Sbjct 2205252 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGTATTCCTCCAGATCAG 2205193 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || ||||| || | || |||| |||||| || ||| ||||| Sbjct 2205192 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAAC 2205133 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || ||| | || || Sbjct 2205132 ATCCAGAAGGAGTCGACCCTTCATCTGGTCCT 2205101 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || ||| ||||||| | || || ||| | || Sbjct 2205996 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACCATCACCTTGGAGGTCGAGCCCTCG 2205937 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| || || || || ||||| || || || Sbjct 2205936 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGTATTCCTCCAGATCAG 2205877 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || ||||| || | || |||| |||||| || ||| ||||| Sbjct 2205876 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAAC 2205817 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || ||| | || || Sbjct 2205816 ATCCAGAAGGAGTCGACCCTTCATCTGGTCCT 2205785 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || ||||||| | || || ||| | || Sbjct 2206224 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCCTCG 2206165 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||| || || ||||| || || || Sbjct 2206164 GACACCATTGAGAATGTTAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAG 2206105 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || ||||| || | || |||| |||||| || ||| ||||| Sbjct 2206104 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAAC 2206045 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || ||| | || || Sbjct 2206044 ATCCAGAAGGAGTCGACCCTTCATCTGGTCCT 2206013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433291871413415