Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq6839 293 3e-74 seq6841 118 1e-21 >seq6839 Length=26866924 Score = 293 bits (324), Expect = 3e-74 Identities = 618/900 (69%), Gaps = 35/900 (4%) Strand=Plus/Plus Query 92742 TTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACA 92801 ||||||||| ||||| |||||||| |||||||| || ||||| || | || || || Sbjct 3409366 TTAGAAATCCGCATCAAGTGTAAAGACATTGTCTAGCCGATTCG-ATG--TGACGCC-CA 3409421 Query 92802 TTT-TTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCG 92860 | ||| ||||| ||||||||||| || ||||| || ||||| || |||| || ||| Sbjct 3409422 TACGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGCGAGATCA 3409481 Query 92861 AATTCACTA--GTGATTGGATTCTTGGCGTTATAATACTTTTC----ACCGA--TCAACT 92912 | || | |||| ||||||||| | || || | ||| | ||||| || || Sbjct 3409482 TCTCCATAAAGGTGAATGGATTCTTCGTATTGTAG-ATTTTGCCAACACCGAGTTCCAC- 3409539 Query 92913 CGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTC 92972 ||| | | ||| || |||||||| || ||||| |||||||| |||||||||| | Sbjct 3409540 ----CAACAGACGATCCGCAACAAATTCAATATACTGGGACATCAATGCACAATTCATGC 3409595 Query 92973 CTAG-AAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCT 93031 | | ||| | || || ||||| || || | || |||| ||| || ||| || || Sbjct 3409596 CAATCAAGTTG-ACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCC 3409654 Query 93032 TTCAAGATTTCTATTA--CTCT-ACTATTTGGTGGTTTTTGTACGACATAATTGTACATT 93088 | ||| || || | | || || | || ||| | || | || | |||| Sbjct 3409655 GAGATGATCTCAATGATGCGCTCACGGCTAGGACGTT---GCACCAAATGCCGGAACATC 3409711 Query 93089 AAGCAC-GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGT 93147 | ||| |||||||| ||| || || ||||| ||||| |||||||||||| ||| || Sbjct 3409712 AT-CACAGCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGT 3409770 Query 93148 TAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaa 93207 | ||| || | ||| || |||||||| |||||||| || || ||||| || ||| ||| Sbjct 3409771 CAGACCGGGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAA 3409830 Query 93208 aaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACT 93267 || || || |||||||| || || || | || | ||| |||| || |||| || Sbjct 3409831 GAAGATTCCCTCCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCGGCCTTC-- 3409888 Query 93268 GCTGA--TCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATA 93325 | ||| |||| | ||||||||||| ||| ||| | | || | |||||| | Sbjct 3409889 GATGAAATCCAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAACG 3409948 Query 93326 GCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAA 93385 || || || || ||||| || || | | ||| | || ||||||||||| | || Sbjct 3409949 GCATTGAACAGATAATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTG 3410008 Query 93386 TACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCC 93445 ||||| || || || ||||||||||| || ||||| || || |||||||| | |||||| Sbjct 3410009 TACATCTCCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCG 3410068 Query 93446 GTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGAT 93505 || || ||||| || || || | ||| || ||||| ||||| || || |||||||| Sbjct 3410069 GTTATTTGCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGAA 3410128 Query 93506 GCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATC-TTTAAGCTTATC 93564 || ||||| || || | | ||| ||||| || ||| | ||| |||| | | | Sbjct 3410129 GCGGCAAAGAAGGCGAGCACATGGGAGATAAAGTGGCGCTCGTTATCAGTTAAACGT-GC 3410187 Query 93565 CCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 ||| |||| | || || || ||||| || || || |||||||| || || || || || Sbjct 3410188 CCAGTCGGTCAAGTCCTTAGAGAGATCCACCTCCTCCACAGTCCAGAATGAGGCCTCGGC 3410247 >seq6841 Length=34148556 Score = 118 bits (130), Expect = 1e-21 Identities = 80/89 (90%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||| | | |||| Sbjct 30849390 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAGC 30849331 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||||||||||||||||||||| || Sbjct 30849330 GTGGGTTCGAACCCCACACCTGACAAGTT 30849302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556813181440840