Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq6838 86.0 4e-12 seq6836 86.0 4e-12 >seq6838 Length=24764193 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || || | || ||||||||||| ||| |||| ||| | | Sbjct 2122668 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACCATCACCTTGGAGGTGGAGCCATCC 2122727 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || ||| || || || ||| | || | ||||| Sbjct 2122728 GATACCATTGAGAATGTGAAGGCTAAGATTCAGGACAAGGAAGGTATTCCCCCAGACCAA 2122787 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | |||||||| || ||||| ||||| |||||| || || | || |||||| Sbjct 2122788 CAGCGTCTTATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACCTTGTCTGACTACAAT 2122847 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| || |||||| |||| | ||| | || || || Sbjct 2122848 ATCCAGAAGGAATCGACCCTTCATCTGGTCCTCCGTCTGCGTGGTGG 2122894 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || || | || ||||||||||| ||| |||| ||| | | Sbjct 2123124 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACCATCACCTTGGAGGTGGAGCCATCC 2123183 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| |||||| || || || ||| | || | |||| Sbjct 2123184 GATACCATTGAGAATGTGAAGGCTAAAATTCAGGACAAGGAAGGTATTCCCCCAGACCAG 2123243 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | || ||||| || ||||| ||||| |||||| || || | |||||||| Sbjct 2123244 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACCTTGTCTGATTACAAC 2123303 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||| || |||||| |||| | ||| | || || || Sbjct 2123304 ATTCAGAAGGAATCGACCCTTCATCTGGTCCTCCGTCTGCGTGGTGG 2123350 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || || | || ||||| ||||| ||| |||| ||| | | Sbjct 2124036 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCC 2124095 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| |||||| || || || ||| | || | |||| Sbjct 2124096 GATACCATTGAGAATGTGAAGGCTAAAATTCAGGACAAGGAAGGTATTCCCCCAGACCAG 2124155 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | |||||||| || ||||| ||||| |||||| || || | |||||||| Sbjct 2124156 CAGCGTCTTATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACCTTGTCTGATTACAAC 2124215 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||| || |||||| |||| | ||| | || || || Sbjct 2124216 ATTCAGAAGGAATCGACCCTTCATCTGGTCCTCCGTCTGCGTGGTGG 2124262 >seq6836 Length=4525533 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || || || ||||||||||| ||| |||| ||| || | Sbjct 2205540 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACCATCACCTTGGAGGTCGAACCCTCG 2205481 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| || || || || |||||| | || | | ||| Sbjct 2205480 GACACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAA 2205421 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | || ||||| |||||||| || || || ||| | ||| || |||| ||||| Sbjct 2205420 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAAC 2205361 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || |||||||| || || |||||| |||| | ||| | || || || Sbjct 2205360 ATCCAGAAGGAGTCGACCCTTCATCTGGTCCTCCGTCTGCGTGGTGG 2205314 Score = 82.4 bits (90), Expect = 5e-11 Identities = 168/250 (67%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || || || ||||||||||| ||| |||| || || | Sbjct 2204856 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACCATCACCTTGGAGGTCGAGCCCTCG 2204797 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| || || || || |||||| | || | | || Sbjct 2204796 GACACCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAG 2204737 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | || ||||| |||||||| || || || ||| | ||| || |||| ||||| Sbjct 2204736 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAAC 2204677 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAATAATAA 22073 || |||||||| |||||| | || |||| | ||| |||| || || ||||| | | Sbjct 2204676 ATCCAGAAGGAGTCTACTTTGCACTTGGTGCTCCGTCTACGTGGTGGTAATTAAATTTGA 2204617 Query 22074 AAACCATAAA 22083 ||| ||||| Sbjct 2204616 AAATTATAAA 2204607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358094941456714