Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq6838 122 7e-23 seq6836 114 1e-20 seq5292 114 1e-20 seq6840 109 5e-19 >seq6838 Length=24764193 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | || ||||| || |||||||||||||| Sbjct 2124949 ATACCACCACGCAGACGGAGAACCAAGTGGAGGGTCGATTCCTTCTGAATGTTGTAATCA 2124890 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || ||| |||||| ||||| || || ||| |||| |||||||| ||||| || Sbjct 2124889 GACAAGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGG 2124830 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| |||||| || | | ||||| ||||||| | || Sbjct 2124829 GGAATACCTTCCTTGTCCTGAATCTTAGCCTTCACGTTTTCAATCGTGTCGGAAGGCTCC 2124770 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || ||||| ||||| || || || || || ||||| Sbjct 2124769 ACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTAACGAAGATTTGCAT 2124720 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||| | || ||||| || |||||||||||||| Sbjct 2123353 ATACCACCACGCAGACGGAGGACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAATCA 2123294 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || ||| |||||| ||||| || || ||| |||| |||||||| ||||| || Sbjct 2123293 GACAAGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGG 2123234 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||| || || | | |||| ||| |||| | || Sbjct 2123233 GGAATACCTTCCTTGTCCTGAATTTTAGCCTTCACATTCTCAATGGTATCGGATGGCTCC 2123174 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | |||||||| ||||| || || || || || ||||| Sbjct 2123173 ACCTCCAAGGTGATGGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 2123124 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | || ||||| || |||||||||||||| Sbjct 2124493 ATACCACCACGCAGACGGAGAACCAAGTGGAGGGTCGATTCCTTCTGAATGTTGTAATCA 2124434 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| ||||| || || ||| |||| |||||||| || || || Sbjct 2124433 GACAAGGTGCGGCCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGG 2124374 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| |||||| || | | |||| ||| |||| | || Sbjct 2124373 GGAATACCTTCCTTGTCCTGAATCTTAGCCTTCACATTCTCAATGGTATCGGATGGCTCC 2124314 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | |||||||| ||||| || || || || || ||||| Sbjct 2124313 ACCTCCAAGGTGATGGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 2124264 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||||||||| || | || || ||||| | ||||| || |||||||||||||| || Sbjct 2125175 ACCGCCACGCAGACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGA 2125116 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || ||| |||||| ||||| || || || |||| |||||||| || || || || Sbjct 2125115 CAGGGTGCGACCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGG 2125056 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| ||||| |||||| || | | |||| ||| |||| | || || Sbjct 2125055 AATACCTTCCTTGTCCTGAATCTTAGCCTTCACATTCTCAATGGTATCGGAAGGCTCCAC 2124996 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || | || ||||| ||||| || || || || || ||||| Sbjct 2124995 CTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 2124948 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||| | || ||||| || || || ||||| || Sbjct 2122897 ATACCACCACGCAGACGGAGGACCAGATGAAGGGTCGATTCCTTCTGGATATTGTAGTCA 2122838 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || ||| |||||| ||||| || || ||| |||| |||||||||||||| || Sbjct 2122837 GACAAGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATAAGACGCTGTTGGTCTGGG 2122778 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| |||||| || | | |||| ||| |||| | || Sbjct 2122777 GGAATACCTTCCTTGTCCTGAATCTTAGCCTTCACATTCTCAATGGTATCGGATGGCTCC 2122718 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | |||||||| ||||| || || || || || ||||| Sbjct 2122717 ACCTCCAAGGTGATGGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 2122668 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||| | || ||||| || |||||||||||||| Sbjct 2124265 ATACCACCACGCAGACGGAGGACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAATCA 2124206 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || ||| |||||| ||||| || || ||| |||| |||||||| ||||| || Sbjct 2124205 GACAAGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGG 2124146 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||| || || | | |||| ||| |||| | || Sbjct 2124145 GGAATACCTTCCTTGTCCTGAATTTTAGCCTTCACATTCTCAATGGTATCGGATGGCTCC 2124086 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || ||||| ||||| || || || || || ||||| Sbjct 2124085 ACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 2124036 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | || ||||| || || ||||||||||| Sbjct 2124721 ATACCACCACGGAGACGGAGAACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCA 2124662 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| ||||| || |||||| |||| |||||||| || || || Sbjct 2124661 GACAAGGTGCGGCCATCTTCCAGTTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGG 2124602 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||| || || | | |||| ||| |||| | || Sbjct 2124601 GGAATACCTTCCTTGTCCTGAATTTTAGCCTTCACATTCTCAATGGTATCGGATGGCTCC 2124542 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | |||||||| ||||| || || || || || ||||| Sbjct 2124541 ACCTCCAAGGTGATGGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 2124492 >seq6836 Length=4525533 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || | ||| | || || || || || |||||||| ||| Sbjct 2205311 ATGCCACCACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCG 2205370 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| || ||| || || || || |||||| |||| ||||||||||| || || Sbjct 2205371 GACAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCTGGG 2205430 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| ||||| || | | |||| |||||| | || |||| Sbjct 2205431 GGAATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTGTCCGAGGGTTCG 2205490 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| ||| | |||||||| |||| ||| || || || ||||||||| Sbjct 2205491 ACCTCCAAGGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCATG 2205541 >seq5292 Length=4599 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||||||||| || | || || ||||| | ||||| || |||||||||||||| || Sbjct 1849 ACCGCCACGCAGACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGA 1790 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || ||| |||||| ||||| || || || |||| |||||||| || || || || Sbjct 1789 CAGGGTGCGACCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGG 1730 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| ||||| |||||| || | | |||| ||| |||| | || || Sbjct 1729 AATACCTTCCTTGTCCTGAATCTTAGCCTTCACATTCTCAATGGTATCGGAAGGCTCCAC 1670 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || | || ||||| ||||| || || || || || ||||| Sbjct 1669 CTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 1622 >seq6840 Length=32352404 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | | || || || | || || |||||||| |||||||| ||| Sbjct 15336118 ACCACCACGAAGGCGGAGCACCAAGTGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGGA 15336177 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||| ||| |||||| | ||| || ||||| |||| |||||||| || || ||||| Sbjct 15336178 AAGAGTGCGACCATCTTCCAATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGG 15336237 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||||||||| ||||| ||| | | || | ||| || | | |||||| Sbjct 15336238 AATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTATCCGACGGTTCGAC 15336297 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || || || ||||| ||||| |||||||| Sbjct 15336298 CTCAAGAGTGATGGTCTTACCCGTTAGGGTTTTAACAAAGATCTGCAT 15336345 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114152 AATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC 114211 ||| || ||||| || | | || || || | || || || || ||||||||||| || Sbjct 311373 AATGCCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTC 311314 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 | || ||| || ||| || || || || || ||| |||| | |||||| || || || Sbjct 311313 GGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGG 311254 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 || || || |||||||| ||||| || | | || | |||||| | || || Sbjct 311253 TGGGATTCCCTCTTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTC 311194 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| |||| ||| | || |||||||| |||||||| || || || ||||| Sbjct 311193 GACCTCCAAGGTAATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 311143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420099371425692