Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq6828 104 2e-17 seq6192 100 2e-16 seq6838 93.3 3e-14 seq6839 91.5 1e-13 seq5292 91.5 1e-13 >seq6828 Length=421677 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 170450 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 170509 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 170510 ATAACTGATATAATGAGCCTTTTGCGGTTTC 170540 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 170450 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 170509 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 170510 ATAACTGATATAATGAGCCTTTTGCGGTTTC 170540 >seq6192 Length=7925 Score = 100 bits (110), Expect = 2e-16 Identities = 71/79 (90%), Gaps = 2/79 (3%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 6886 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 6945 Query 114392 AAAACTGATATATTGAGCC 114410 | |||||||||| |||||| Sbjct 6946 ATAACTGATATAATGAGCC 6964 Score = 100 bits (110), Expect = 2e-16 Identities = 71/79 (90%), Gaps = 2/79 (3%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 6886 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 6945 Query 115589 AAAACTGATATATTGAGCC 115607 | |||||||||| |||||| Sbjct 6946 ATAACTGATATAATGAGCC 6964 >seq6838 Length=24764193 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/237 (68%), Gaps = 18/237 (8%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || || ||||||||||| || |||||||||||||||||||| | Sbjct 2123351 ACCACCACGCAGACGGAGGACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAATCAGA 2123292 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 ||| || | || |||| |||||||||||| || ||||| |||||||| || || Sbjct 2123291 CAAGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGG 2123232 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | | || |||||| |||||| || ||||| | ||| | | ||| | Sbjct 2123231 AATACCTTCCTTGTCCTGAATTTTAGCCT---------TCACATTCTCAATGGTATCGGA 2123181 Query 34080 T---TCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | || ||| || || ||||| || || || || ||||| ||||||||||| Sbjct 2123180 TGGCTCCACCTCCAAGGTGATGGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 2123124 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 33899 AACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTG 33958 |||| || | ||| ||||| |||| |||||| || |||||| ||||||||||| || | Sbjct 2125176 AACCGCCACGCAGACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAG 2125117 Query 33959 CCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || | || |||| ||||||||||||||| ||||| ||||||||||| Sbjct 2125116 ACAGGGTGCGACCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGATC 2125062 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || || ||||||||||| ||| |||||||| |||||||| || | Sbjct 2123123 ACCACCACGCAGACGGAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 2123064 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 ||| || | || |||| |||||||||||| || ||||| |||||||| || Sbjct 2123063 CAAGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 2123010 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || || ||||||||||| || |||||||||||||||||||| | Sbjct 2124263 ACCACCACGCAGACGGAGGACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAATCAGA 2124204 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 ||| || | || |||| |||||||||||| || || || |||||||| || Sbjct 2124203 CAAGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTC 2124150 >seq6839 Length=26866924 Score = 91.5 bits (100), Expect = 1e-13 Identities = 187/271 (69%), Gaps = 9/271 (3%) Strand=Plus/Plus Query 37831 ACGATCTCTTGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCATCAGT 37890 ||||||| ||||||| |||| || | ||||| || || || || ||||| || Sbjct 677452 ACGATCT---GTGGAACTCGGCCCAGCTGCAGCTGGTCAAGGAAGGCAAAATGCACGGGT 677508 Query 37891 ATATGCGCATGTATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCTCAGACC--GC 37948 | |||||||||||||| ||| || ||||| || ||| | || | || | || | || Sbjct 677509 TTCTGCGCATGTATTGGGCCAAAAAGATTTTAGAGTGGACCGA-AACGC-CGGAACAAGC 677566 Query 37949 GCTCAACTACGCCAT-TTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCCAACG 38007 ||| | || ||| |||| | || || |||||||| |||| || || ||||| || | Sbjct 677567 GCTTGAGTATAGCATATTAT-TGAACGACAAGTACAGTCTGGATGGACGCGATCCGAATG 677625 Query 38008 GTTACGTCGGCTGTTTGTGGTCTATATGCGGGCTACACGATAGAGCCTGGCGCGAGATTC 38067 | ||||| || || ||||||| || | ||| | ||||| || |||| ||| Sbjct 677626 GCTACGTTGGTTGCATGTGGTCCATCGGTGGGATTCACGACCAAGGCTGGAAGGAGCGCG 677685 Query 38068 CCATTTACGGCAAGATTCGGTACATGAACTA 38098 | || | || |||||||| || |||||||| Sbjct 677686 CGATATTTGGTAAGATTCGCTATATGAACTA 677716 >seq5292 Length=4599 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 33899 AACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTG 33958 |||| || | ||| ||||| |||| |||||| || |||||| ||||||||||| || | Sbjct 1850 AACCGCCACGCAGACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAG 1791 Query 33959 CCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || | || |||| ||||||||||||||| ||||| ||||||||||| Sbjct 1790 ACAGGGTGCGACCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGATC 1736 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || || ||||||||||| || ||||||||| || ||||| || | Sbjct 253 ACCACCACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAGTCAGA 194 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 ||| || | || |||| ||||||||||||||| ||||| ||||||||||| Sbjct 193 CAAAGTGCGGCCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGATC 140 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || || ||||||||||| || ||||||||| || ||||| || | Sbjct 709 ACCACCACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAGTCAGA 650 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 ||| || | || |||| |||||||||||| || ||||| ||||||||||| Sbjct 649 CAAGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATC 596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397029295046482