Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq6840 87.8 2e-12 seq6839 86.0 7e-12 >seq6840 Length=32352404 Score = 87.8 bits (96), Expect = 2e-12 Identities = 185/270 (69%), Gaps = 6/270 (2%) Strand=Plus/Plus Query 171880 TGTGAAGATGTACCT--CGTTTGAGACGCATCTTTGCCACCCATGAGACGCGTCCCAAAT 171937 |||||||||||| | || ||| || |||||| ||||| | | ||| || || || Sbjct 29140810 TGTGAAGATGTAACGAGCGCTTGC-ACA-ATCTTTACCACCGGTCAAACGTGTGCCGAAC 29140867 Query 171938 TGACCACACGGTTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTG 171997 ||||| | ||||| || | |||||||||||| || || | | | | ||||| || Sbjct 29140868 TGACCGCGAGGTTCCAGCAAATTGATATTGTTCGATCCGACAAAATTCTGCGCCAAATTT 29140927 Query 171998 ACAATCGT-ATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCGACATA 172056 || || || ||| || ||||| | || ||||||||||| || ||| | || || || | Sbjct 29140928 ACTATAGTCATCTGC-AGGGACATCTCGCCGTGATGGTATGCTGACATTTCGGCCACCGA 29140986 Query 172057 CGCCGCCAACTGTGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACAT 172116 | | | ||| || || || | ||| |||| ||| | |||||||| | |||| Sbjct 29140987 TCCGGATAGCTGAGCAACTTTTACCTCCCTCTTGTCGTTACGCTTGAAGCACGTAAACAT 29141046 Query 172117 GACCTTTCTCTGTGAAGGCTTGAGGCCGTC 172146 ||||| | ||| |||||| ||||| || Sbjct 29141047 CACCTTACGCTGACCAGGCTTTAGGCCATC 29141076 >seq6839 Length=26866924 Score = 86.0 bits (94), Expect = 7e-12 Identities = 510/799 (64%), Gaps = 22/799 (3%) Strand=Plus/Plus Query 125774 TTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAATGGGTTC 125833 |||||||||||||| ||||| || |||| ||| |||||||||| ||||| ||| Sbjct 3409445 TTCTCGAAGAAGTTAGTCTTGCCATCCAGCGAGATCATCTCCATAAAGGTGAATGGATTC 3409504 Query 125834 TTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGACGATCCGAGACGTACTC 125892 || | || | ||| ||| || | || | | | |||||||||| || | || Sbjct 3409505 TTCGTATTGTAGATT-TTGCCAACACCGAGTTCCACCAACAGACGATCCGCAACAAATTC 3409563 Query 125893 AATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGAGCGCGTCCAA 125952 ||| |||| |||||| || | ||||| || || | ||| || || || || Sbjct 3409564 AATATACTGGGACATCAATGCACAATTCATGCCAATCAAGTTGACGGGCAGAGCATCTGT 3409623 Query 125953 GATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGTGAATGGTGTCCACCCC 126012 || ||| | | |||||| || || ||| | ||| | |||| || | | | Sbjct 3409624 GAGAAACTCTTGCTCAATGGTAACAGCATCCGAGATGATCTC---AATGATGCGCTCACG 3409680 Query 126013 ---AGGTCTATTGCGCAAAGT-CTTGAAGAGTTCCACGGCAAACTCTTGGTGGAGACCCT 126068 ||| | |||| | || | | ||| | ||| ||||| || || | |||| Sbjct 3409681 GCTAGGACG-TTGCACCAAATGCCGGAACATCATCACAGCAAAGTCACAATGCAAGCCCT 3409739 Query 126069 CGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCA 126128 |||| || ||||| | ||||| |||||| ||| || ||||| ||||| || ||||||| Sbjct 3409740 CGTCGCGTGAGATCAACTCATTGGAGAAGGTCAGACCGGGCATCAGACCACGTTTCTTCA 3409799 Query 126129 ACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACGCAA 126188 ||| || |||| ||| || ||||||||||||||||| |||||||||| Sbjct 3409800 GCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCCCTCCACGGCAGCGAACGCAA 3409859 Query 126189 AGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAA-CCACTTCATCGCCCACTGCGCC 126247 || | ||| || || | |||| | || | ||| ||| | |||||| | ||| Sbjct 3409860 TGATTCTCTC-GCCAAAGTTCGCGGCCTTCGATGAAATCCAAGAGAGCGCCCAATCGGCC 3409918 Query 126248 TTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGATGGA 126307 ||| || || | || | || | | || | || || | | | ||| |||| Sbjct 3409919 TTTCGCTTGACAGCGGGCATTGTTTCAACGGCATTGAACAGATAATCCCGTTCCTGTGGA 3409978 Query 126308 TCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCATTTCATTATGG 126367 || | || || |||| || || || | || ||| || ||| |||| Sbjct 3409979 TCCCTAATATATGTATCGATCAGCACGCTGTACATCTCCGAGTGCAC--ATTCTCCATGG 3410036 Query 126368 C--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCGGCAAAATTG- 126424 | ||| | | |||||| | || |||||| |||| || ||||| | ||| || | Sbjct 3410037 CGATTTGAAAGCCATAGAAACAACGAGCTTCGGTTATTTGCACCTCCT-GGCTGAAGCGC 3410095 Query 126425 TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGATATACTTT 126484 | | ||||||| |||||| |||||||| | ||||| || || || | || Sbjct 3410096 TCGACAAGATTCTCATTAACAATGCCATCGGAAGCGGCAAAGAAGGCGAGCACATGGGAG 3410155 Query 126485 ATGAATTTCTGTTCATTCTC-GTTCAGGGTCTTCCAGTC-GTCAAGATCCTTCGAGAGAT 126542 || || | | || || || ||| | || |||||| |||||| ||||| ||||||| Sbjct 3410156 ATAAAGTGGCGCTCGTTATCAGTTAAACGT-GCCCAGTCGGTCAAG-TCCTTAGAGAGAT 3410213 Query 126543 CTACCTCCTCCGCAGTCCA 126561 | ||||||||| ||||||| Sbjct 3410214 CCACCTCCTCCACAGTCCA 3410232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597302518800280