Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq6840 159 3e-34 seq5292 100 3e-16 >seq6840 Length=32352404 Score = 159 bits (176), Expect = 3e-34 Identities = 479/735 (65%), Gaps = 11/735 (1%) Strand=Plus/Plus Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647 || |||||| | ||||| || || || || || |||||| | | || ||| | || ||| Sbjct 31472063 ATCATCGAATCTCAAGTAGAGACTGGTACTCCTTACATGTTATTTAAGGACTCTTGTAAC 31472122 Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707 || |||| ||| || || | ||||| |||||||| |||||||| ||| | ||||| Sbjct 31472123 AGAAAAAGCAACCAACAAAATGTTGGAACTATAAAATGCAGTAATCTGTGCACAGAAATA 31472182 Query 123708 ATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAAT 123767 | ||||| | | ||| || | || |||||||||||||| || || | ||| Sbjct 31472183 GTTGAATATTCGGCACCAGATGAAATAGCTGTGTGTAATTTGGCGTCAATCGCACTTAAT 31472242 Query 123768 CG--TTGCGTCGAAAACGGCG----CTTTTAATTTCCAAACGCTCAAACGCATAACAAAA 123821 ||| | || | || | ||| | | || ||| ||| ||| |||| ||| Sbjct 31472243 ATGTTTGTGACGCA---GGAGAAATCTTATGACTTTAAAAAGCTTAAAGATGTAACTAAA 31472299 Query 123822 ACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCG 123881 | || || || || || ||||| || ||| | |||| || |||||| ||||| Sbjct 31472300 ATCGTTACGAAAAACTTAAATAAAATAATTGATATAAATTACTACCCTTTGCCAGAAGCT 31472359 Query 123882 CGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCG 123941 |||||||| ||| | || | || | || | |||||||| || ||||| Sbjct 31472360 AAAAAATCTAATTTACGTCACCGTCCTATTGGTATTGGAGTCCAAGGGTTTGCGGACGCA 31472419 Query 123942 TTTGTAATGCTGCGC-ATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAAT 124000 || || | |||| || || |||||||| |||||| | | ||| ||| || Sbjct 31472420 TTAATATTAATGCGGTATTCC-TACGAAAGTCGTGAAGCATTTCTATTAAATCAGCAGAT 31472478 Query 124001 AGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGG 124060 |||||| || || || || |||||||| || || || ||| | || | | | || Sbjct 31472479 TTTCGAAACTATATACTATGGAGCTTTGGAAGCCAGTTGTGAATTGGCTCAGAGAGATGG 31472538 Query 124061 CGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTG 124120 | || || | ||||| ||||| || | ||| ||| ||||||||||| || ||||| Sbjct 31472539 ACCATATGAGACTTACGTTGGCAGTCCAGTAAGCAAAGGAATTTTGCAGTATGATATGTG 31472598 Query 124121 GAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCA 124180 ||| |||| ||| || | |||||||||| | | | ||| || ||| || || Sbjct 31472599 GAACAAATCACCAACAGATCTTTGGGACTGGAATGCTCTTAAAAAATCTATAGCGCAACA 31472658 Query 124181 CGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTT 124240 |||| | | || || | | | || |||||| || ||| | || || ||||| || Sbjct 31472659 CGGTGTCAGAAATTCTTTACTCATCGCTCCCATGCCTACAGCATCTACAGCGCAAATATT 31472718 Query 124241 AGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGC 124300 || || || || || |||||||| | ||| || | ||| ||||||| || | Sbjct 31472719 GGGCAATAATGAGTCGTTCGAGCCTTATACTTCAAACATTTACACAAGACGAGTATTGTC 31472778 Query 124301 CGGCGATTTTCAAGT 124315 ||||| |||||||| Sbjct 31472779 TGGCGAGTTTCAAGT 31472793 >seq5292 Length=4599 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||||||||||||||| || || | ||| | || |||| ||| Sbjct 912 TGGAGGGTCGATTCCTTTTGGATATTGTAGTCAGACAAGGTGCGACCGTCTTCCAGTTGC 853 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | |||| || |||||||| || ||||| ||||| || || ||||| || Sbjct 852 TTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGAATCTTG 793 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| ||| | |||||||||| ||| || || ||||| | || ||||| || Sbjct 792 GCCTTGACGTTTTCAATCGTGTCGGAAGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTC 733 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || || || |||||||| Sbjct 732 AGGGTCTTCACGAAGATTTGCAT 710 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||||||||||||||| || || | ||| | || |||| ||| Sbjct 1596 TGGAGGGTCGATTCCTTTTGGATATTGTAGTCAGACAAGGTGCGACCGTCTTCCAGTTGC 1537 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | |||| || |||||||| || ||||| ||||| || || ||||| || Sbjct 1536 TTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGAATCTTG 1477 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| ||| | |||||||||| ||| || || ||||| | || ||||| || Sbjct 1476 GCCTTGACGTTTTCAATCGTGTCGGAAGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTC 1417 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || || || |||||||| Sbjct 1416 AGGGTCTTCACGAAGATTTGCAT 1394 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||||||||||||||| || || | ||| | ||| |||| ||| Sbjct 1368 TGGAGGGTCGATTCCTTTTGGATATTGTAGTCAGACAAGGTGCGACCATCTTCCAGTTGC 1309 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | |||| || |||||||| || ||||| ||||| || || ||||| || Sbjct 1308 TTGCCAGCGAAGATCAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGAATCTTA 1249 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | || | ||| ||||||| ||| || || | ||| | || ||||| || Sbjct 1248 GCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAAGTGATGGTCTTGCCAGTC 1189 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || || || |||||||| Sbjct 1188 AGGGTCTTCACGAAGATTTGCAT 1166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451964548076360