Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq6840 96.9 4e-15 >seq6840 Length=32352404 Score = 96.9 bits (106), Expect = 4e-15 Identities = 187/270 (69%), Gaps = 6/270 (2%) Strand=Plus/Plus Query 175900 TGTGAAGATGTACCT--CGTTTGAGACGCATCTTTGCCACCCATGAGACGCGTCCCAAAT 175957 |||||||||||| | || ||| || |||||| ||||| | | ||| || || || Sbjct 29140810 TGTGAAGATGTAACGAGCGCTTGC-ACA-ATCTTTACCACCGGTCAAACGTGTGCCGAAC 29140867 Query 175958 TGACCACATGGCTCAAGGAGATTGATATTGTTTGAGCCCATATAGTCATTCGCCAACTTG 176017 ||||| | || || || | |||||||||||| || || | | | | | |||||| || Sbjct 29140868 TGACCGCGAGGTTCCAGCAAATTGATATTGTTCGATCCGACAAAATTCTGCGCCAAATTT 29140927 Query 176018 ACAATCGT-ATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCCACATA 176076 || || || ||| || ||||| | || ||||||||||| || ||| | || ||||| | Sbjct 29140928 ACTATAGTCATCTGC-AGGGACATCTCGCCGTGATGGTATGCTGACATTTCGGCCACCGA 29140986 Query 176077 CGCCGCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACAT 176136 | | | ||| || || || | ||| |||| ||| | |||||||| | |||| Sbjct 29140987 TCCGGATAGCTGAGCAACTTTTACCTCCCTCTTGTCGTTACGCTTGAAGCACGTAAACAT 29141046 Query 176137 GACCTTTCTCTGTGAAGGCTTGAGGCCGTC 176166 ||||| | ||| |||||| ||||| || Sbjct 29141047 CACCTTACGCTGACCAGGCTTTAGGCCATC 29141076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613454737465560