Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq6839 136 6e-27 >seq6839 Length=26866924 Score = 136 bits (150), Expect = 6e-27 Identities = 484/746 (65%), Gaps = 23/746 (3%) Strand=Plus/Plus Query 159644 ACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAAT 159703 || || |||||||| ||||| |||||||| |||| || || ||||| || |||| Sbjct 3409439 ACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGCGAGATCATCTCCATAAAGGTGAAT 3409498 Query 159704 GGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACA 159763 || |||||| | ||| || || ||||| || ||| || | || || ||| Sbjct 3409499 GGATTCTTCGTATTGTAGATTTTGCCAACACCGAGTTCCACCAACAGACGATCCGCAACA 3409558 Query 159764 AATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCT 159823 ||||| || || ||||| |||| || || || | || | ||||| || || Sbjct 3409559 AATTCAATATACTGGGACATCAATGCACAATTCATGCCAATCAAGTTGACGGGCAGAGCA 3409618 Query 159824 TCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCG 159883 || | |||||||| | |||||| || || || | | |||| || || || Sbjct 3409619 TCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCCGAGATGATCTCAATGATGCGCTCA 3409678 Query 159884 TACCCCGGC--TTGCCCAAAATGTGGTCCTTAAACAGGAGGCAC-GCAAAGTCGCAGTGC 159940 | || |||| | ||||| | |||| | ||| |||||||| || ||| Sbjct 3409679 CGGCTAGGACGTTGCACCAAATGCCGG-----AACATCAT-CACAGCAAAGTCACAATGC 3409732 Query 159941 AGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGC 160000 | |||||||| || ||||| ||||| ||||| | | | || || ||||| | ||||| Sbjct 3409733 AAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGTCAGACCGGGCATCAGACCACGT 3409792 Query 160001 GGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCA 160060 || |||||||| || | ||||| || ||||| ||||| ||||||||||| || Sbjct 3409793 TTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCCCTCCACGGCAGCG 3409852 Query 160061 AACGCCACGAGCCTCTCACCAAA---AGAGGCGTTGGTGTCATG-GGTCCACCTTTTGGC 160116 ||||| | || ||||| ||||| | ||| || | ||| |||| || Sbjct 3409853 AACGCAATGATTCTCTCGCCAAAGTTCGCGGCCTTCG----ATGAAATCCAAGAGAGCGC 3409908 Query 160117 CCATTCAGCCTTCTTTGC--GATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCC 160174 ||| || |||| || || || ||||| || ||||| || |||| ||| Sbjct 3409909 CCAATCGGCCT--TTCGCTTGACAGCGGGCATTGTTTCAACGGCATTGAACAGATAATCC 3409966 Query 160175 TGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACA 160234 | |||| |||| | || ||| | |||||| |||||| || | ||||||| Sbjct 3409967 CGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGTACATCTCCGAGTGCACA 3410026 Query 160235 TTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATA-CTGCACCTCCTG 160293 || || ||||| || |||||| |||||| | | || | | || ||||||||||| Sbjct 3410027 TTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAG-CTTCGGTTATTTGCACCTCCTG 3410085 Query 160294 TGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAA 160353 |||| | | | ||||| ||||||| | || |||| || |||||||| || | Sbjct 3410086 GCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGAAGCGGCAAAGAAGGCGAG 3410145 Query 160354 CACGTGAGAGATGAAATGTCTCTCGT 160379 ||| || ||||| || || | ||||| Sbjct 3410146 CACATGGGAGATAAAGTGGCGCTCGT 3410171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795087204290960