Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq6840 102 6e-17 seq6836 87.8 1e-12 >seq6840 Length=32352404 Score = 102 bits (112), Expect = 6e-17 Identities = 165/236 (70%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 39484 CAATCATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTA 39543 |||| || ||| || |||| ||| || ||||| ||||||||| || || || || || Sbjct 311377 CAATAAT-GCCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTG 311319 Query 39544 TAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGA 39603 || |||| || | |||| |||| |||| || || ||| | || || |||||||||||| Sbjct 311318 TAGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGA 311259 Query 39604 TCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCG 39663 || | || | || |||||||| || || || | || | | ||||| | | Sbjct 311258 TCTGGTGGGATTCCCTCTTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAG 311199 Query 39664 CTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || ||||| ||||| || || || || | |||||| |||||||| ||||| Sbjct 311198 GGCTCGACCTCCAAGGTAATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 311143 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 || || ||||| ||||| || |||||||| || || || |||| | | ||| || Sbjct 15336131 CGGAGCACCAAGTGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGACCA 15336190 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || |||||||| || || |||| |||| |||||||||||| | || | ||||||||| Sbjct 15336191 TCTTCCAATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 15336250 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || || || ||| | || | | || || | ||| || || | ||| || Sbjct 15336251 TCCTGGATCTTGGCTTTGACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATG 15336310 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||||||||| ||||| || ||||||||||| Sbjct 15336311 GTCTTACCCGTTAGGGTTTTAACAAAGATCTGCAT 15336345 >seq6836 Length=4525533 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || ||||| |||||||| || || || || || || |||| | Sbjct 2204630 CCACCACGTAGACGGAGCACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 2204689 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | |||| |||| |||| || || || | || || | |||||||||||| | ||| Sbjct 2204690 AGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGA 2204749 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || || ||||| || || |||| | | | ||||| | | || || Sbjct 2204750 ATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGTGTCCGAGGGCTCGACC 2204809 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| || || ||||| || || ||||| || ||||||||||||||| Sbjct 2204810 TCCAAGGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCATG 2204857 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||| ||| || |||| ||| | || || || || || || || |||| Sbjct 2204857 GCCACCACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 2204916 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || | |||| |||| |||| || || || | || || | |||||||||||| | ||| Sbjct 2204917 CAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGG 2204976 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | || || ||||| || || |||| || | | ||||| | | || || Sbjct 2204977 AATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTGTCCGAGGGCTCGAC 2205036 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| || || ||||| || || ||||| || ||||||||||||||| Sbjct 2205037 CTCCAAGGTGATGGTTTTTCCAGTCAAAGTCTTGACGAAGATCTGCATG 2205085 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||| ||| || |||| ||| | || || || || || || || |||| Sbjct 2205313 GCCACCACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 2205372 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || | |||| |||| |||| || || || | || || | |||||| ||||| | ||| Sbjct 2205373 CAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCTGGGGG 2205432 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | || || ||||| || || |||| || | | ||||| | | ||| || Sbjct 2205433 AATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTGTCCGAGGGTTCGAC 2205492 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| || || ||||| || || ||||| || ||||||||||||||| Sbjct 2205493 CTCCAAGGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCATG 2205541 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||| ||| || |||| ||| | || || || || || || || |||| Sbjct 2205541 GCCACCACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 2205600 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || | |||| |||| |||| || || || | || || | |||||||||||| | ||| Sbjct 2205601 CAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGG 2205660 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | || || ||||| || || |||| || | | ||||| | | || || Sbjct 2205661 AATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTGTCCGAGGGCTCGAC 2205720 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| || || ||||| || || ||||| || ||||||||||||||| Sbjct 2205721 CTCCAAGGTGATGGTTTTTCCAGTCAAAGTCTTGACGAAGATCTGCATG 2205769 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||| ||| || |||| ||| | || || || || || || || |||| Sbjct 2205997 GCCACCACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 2206056 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || | |||| |||| |||| || || || | || || | |||||||||||| | ||| Sbjct 2206057 CAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGG 2206116 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | || || ||||| || || |||| || | | ||||| | | || || Sbjct 2206117 AATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTGTCCGAGGGCTCAAC 2206176 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 |||||||| || || || || || ||||| || ||||||||||||||| Sbjct 2206177 CTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATG 2206225 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||| ||| || |||| ||| | || || || || || || || |||| Sbjct 2206225 GCCACCACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 2206284 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || | |||| |||| |||| || || || | || || | |||||||||||| | ||| Sbjct 2206285 CAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGG 2206344 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | || || ||||| || || |||| || | | ||||| | | || || Sbjct 2206345 AATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTGTCCGAGGGCTCAAC 2206404 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| || || || || || ||||| || |||||||||||||| Sbjct 2206405 CTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 2206452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347340638168153