Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq6841 120 1e-21 seq5292 120 1e-21 seq6838 118 4e-21 seq6840 100 1e-15 >seq6841 Length=34148556 Score = 120 bits (132), Expect = 1e-21 Identities = 348/532 (65%), Gaps = 14/532 (3%) Strand=Plus/Minus Query 451082 AATGCCAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGAT 451141 || ||||| || || |||| ||||| |||||||||||||| || | | |||||| | Sbjct 8253410 AACGCCAAGAATACGGTATTCGATGCGAAACGTTTAATTGGACGCAAATTCGATGATAAG 8253351 Query 451142 ACTGTACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCC 451201 | |||| | || || || ||| | || | ||| | || ||||| Sbjct 8253350 AAGATACAGGAGGACTTGAAGCACTGGCCTTTCAAGGTCATCAATGATGGGGGCAAGCCT 8253291 Query 451202 TATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCT 451261 | ||| |||| | | ||| || ||| || |||||| || ||||| || || Sbjct 8253290 AAAATTGAAGTCGAGTTTAAGGGCGAACGCAAGCGTTTTGCACCCGAAGAGATCAGCTCC 8253231 Query 451262 ATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA--GTTACTG 451319 ||||| | || || ||| ||||| || || ||| | || ||||| || | | Sbjct 8253230 ATGGTGTTGACGAAGATGCGGGAAACTGCCGAGGTCTATCTGGG--CTCCAAGGTAAAGG 8253173 Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || ||||| || || || |||||||| ||| | || || ||||| |||||||||| Sbjct 8253172 ATGCTGTCATTACGGTGCCGGCGTATTTCAACGATTCCCAGCGCCAAGCGACTAAAGATG 8253113 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | || || || ||||| ||||| || || ||||| ||||| || || || ||||| | Sbjct 8253112 CTGGCTCCATAGCCGGTTTGAATGTGCTGCGCATTATCAATGAGCCGACGGCGGCTGCCC 8253053 Query 451440 TAGCATATGGACT--AGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGA 451497 | || ||||| || | |||||| ||| | ||| |||| | | | || || Sbjct 8253052 TCGCCTATGGCCTGGACAAAAATCTGAAG-----GGAGAGCGAAATGTGCTGATCTTCGA 8252998 Query 451498 TTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGG---GGTATTTGA 451554 || || || || || ||| || |||| || || || || || | | || || Sbjct 8252997 CTTAGGCGGCGGCACCTTTGACGTGTCCATACTCTCCATCGACGAGGGATCGCTGTTCGA 8252938 Query 451555 AGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAAT 451606 ||| ||||| || |||||||| ||||| || || || ||| | || ||| Sbjct 8252937 AGTGAAGGCGACAGCAGGTGATACGCATCTGGGCGGCGAGGATTTCGACAAT 8252886 Score = 96.9 bits (106), Expect = 1e-14 Identities = 271/414 (65%), Gaps = 3/414 (1%) Strand=Plus/Minus Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252 || |||||| | || | || | || || | ||| | || ||||| ||||| || Sbjct 15620743 GGCAAGCCCAAGATCGAGGTTACGTACAAGGATGAGAAGAAGACTTTCTTCCCTGAGGAG 15620684 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 || || || ||||| | || || ||||| || || || || || | || | Sbjct 15620683 ATCTCCTCCATGGTGTTGACCAAGATGAAGGAGACCGCCGAGGCGTACCTGGGCAAGACG 15620624 Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| |||| || || ||||| ||||| |||||||| ||| |||| || || ||||| Sbjct 15620623 GTTACCAATGCCGTCATCACTGTGCCCGCCTATTTCAACGATTCACAGCGTCAGGCAACC 15620564 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 || ||||| || || || ||||| || || | || ||||||||||| || || || Sbjct 15620563 AAGGATGCTGGCACCATCGCCGGTTTGAACGTATTGCGTATTATTAATGAGCCAACTGCC 15620504 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTA 451492 || || | || ||||| || ||| || || | | ||| ||| | || | Sbjct 15620503 GCGGCCATCGCTTATGGCCT-GGACAA--GAAGGCTGTTGGTGAACGTAATGTGTTGATT 15620447 Query 451493 TTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTT 451552 || ||||| || || || ||| |||| || | || || ||||| || || | || Sbjct 15620446 TTCGATTTGGGCGGTGGTACTTTTGATGTCTCCATTCTGTCGATTGATGACGGCATCTTC 15620387 Query 451553 GAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAAT 451606 || || || | || |||||| || ||| | || ||||| ||| | || ||| Sbjct 15620386 GAGGTCAAATCTACTGCTGGTGACACCCATTTGGGTGGTGAGGATTTCGACAAT 15620333 >seq5292 Length=4599 Score = 120 bits (132), Expect = 1e-21 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||||||||| |||| || || || || ||||| || ||||| | || Sbjct 25 AATGCAGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACTCTGGAGGTTGAGCCTTC 84 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| |||||| |||| || |||||||||||||| |||||||| || ||||| Sbjct 85 CGATACCATTGAGAACGTTAAGGCCAAGATTCAAGATAAGGAGGGAATTCCACCAGATCA 144 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||| | || || | || || ||||| |||||||| | |||||| | || || || Sbjct 145 GCAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGCCGCACTTTGTCTGACTACAA 204 Query 391229 TATTGATAAGGATGCAACACTTCA 391252 ||| | ||||| | || ||||| Sbjct 205 TATCCAGAAGGAGTCGACCCTTCA 228 >seq6838 Length=24764193 Score = 118 bits (130), Expect = 4e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||||||| ||||| || ||||| || || || |||| Sbjct 2123352 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACCATCACTCTGGAGGTGGAGCCATCA 2123411 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | || || ||||| ||||||||||| ||||| || ||||| Sbjct 2123412 GATACCATTGAGAATGTGAAGGCTAAGATTCAGGATAAGGAAGGTATTCCCCCAGATCAG 2123471 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || ||||| |||||||| | || ||| | || || ||| Sbjct 2123472 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACCTTGTCTGACTACAAT 2123531 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | ||||| | || ||||| Sbjct 2123532 ATCCAGAAGGAATCGACCCTTCA 2123554 Score = 114 bits (126), Expect = 5e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||||||| || || || ||||| || || || |||| Sbjct 2122440 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCATCA 2122499 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | || || ||||| ||||||||||| ||||| || ||||| Sbjct 2122500 GATACCATTGAGAATGTGAAGGCTAAGATTCAGGATAAGGAAGGTATTCCCCCAGATCAG 2122559 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || ||||| |||||||| | || ||| | || || ||| Sbjct 2122560 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACCTTGTCTGACTACAAT 2122619 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | ||||| | || ||||| Sbjct 2122620 ATCCAGAAGGAATCGACCCTTCA 2122642 Score = 113 bits (124), Expect = 2e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||||||||| |||| || || || || ||||| || ||||| | || Sbjct 2122211 AATGCAGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACTCTGGAGGTTGAGCCTTC 2122270 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| |||||| | | || || ||||| || |||||||| ||||| || ||||| Sbjct 2122271 CGATACCATTGAGAATGTGAAGGCTAAGATTCAGGACAAGGAAGGTATTCCCCCAGATCA 2122330 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||| | || ||| | || || ||||| |||||||| | || ||| | || || || Sbjct 2122331 GCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACCTTGTCTGACTACAA 2122390 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || ||||| || || Sbjct 2122391 TATCCAGAAGGAATCGACCCTTCATTTGGT 2122420 Score = 100 bits (110), Expect = 1e-15 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||||||| || || || ||||| || || || | || Sbjct 2122896 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCTTCC 2122955 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||||| | || || ||||| ||||||||||| ||||| || || || Sbjct 2122956 GATACCATTGAAAACGTGAAGGCCAAGATTCAGGATAAGGAAGGTATTCCCCCAGACCAG 2123015 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || ||||| |||||||| | || ||| | || || || Sbjct 2123016 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACCTTGTCTGACTACAAC 2123075 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | ||||| | || ||||| Sbjct 2123076 ATCCAGAAGGAATCCACCCTTCA 2123098 >seq6840 Length=32352404 Score = 100 bits (110), Expect = 1e-15 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || |||||||| || || ||||| || || |||||||| || ||| | || Sbjct 15336346 AATGCAGATCTTTGTTAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAACCGTC 15336287 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| ||| || | | ||| || || || || || |||||||||||||| ||||| Sbjct 15336286 GGATACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCA 15336227 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||| |||| || | || || ||| | |||||||| | ||| | | || || || Sbjct 15336226 GCAGCGTCTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCCGACTACAA 15336167 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 || | || || |||| | ||||| || Sbjct 15336166 CATCCAAAAAGAGTCAACCTTGCACTTGGT 15336137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975545227664828