Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq6841 235 4e-56 seq5628 98.7 8e-15 seq6838 96.9 3e-14 >seq6841 Length=34148556 Score = 235 bits (260), Expect = 4e-56 Identities = 567/856 (66%), Gaps = 4/856 (0%) Strand=Plus/Plus Query 517859 CCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTA 517918 || ||||||| ||||| | ||||| | | || || || || || || | ||| || Sbjct 15620169 CCCTCGAACAGCGAATCGATCTCAATGCTCGCCTGGGTAGATGAGGAAAGAGTACGCTTT 15620228 Query 517919 GCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--TCAAATCTG 517976 ||||| ||||| || || | || | || | || ||| ||| | ||| ||| Sbjct 15620229 GCACGCTCACAGGCAGTGCGCAGACGACGCAGAGCAC--GCTTGTTGGTGGTCAGATCCT 15620286 Query 517977 TTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTT 518036 | || | || | |||||| || | ||| | || || |||||||| || ||||| | Sbjct 15620287 TCTTGTGCTTGCGCTTGAACTCCTGCACAAAGTGAGTGACTAGACGATTGTCGAAATCCT 15620346 Query 518037 CACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAG 518096 |||| ||||| | || | || | |||| | | || | ||| | || || |||| | Sbjct 15620347 CACCACCCAAATGGGTGTCACCAGCAGTAGATTTGACCTCGAAGATGCCGTCATCAATCG 15620406 Query 518097 ACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTT 518156 ||| || | |||||| || ||||| |||| ||| ||||| | ||||| ||| Sbjct 15620407 ACAGAATGGAGACATCAAAAGTACCACCGCCCAAATCGAAAATCAACACATTACGTTCAC 15620466 Query 518157 TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTC 518216 | || || || || ||||| || | || || |||||||| ||||||||||| | Sbjct 15620467 CAACAGCCTTCTTGTCCAGGCCATAAGCGATGGCCGCGGCAGTTGGCTCATTAATAATAC 15620526 Query 518217 TCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGT 518276 ||| || || | ||| || || | || ||||| || || || || | |||||||||| Sbjct 15620527 GCAATACGTTCAAACCGGCGATGGTGCCAGCATCCTTGGTTGCCTGACGCTGTGAATCGT 15620586 Query 518277 TAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTG 518336 | ||||| || || ||||| || ||||||| || || || || | || || | Sbjct 15620587 TGAAATAGGCGGGCACAGTGATGACGGCATTGGTAACCGTCTTGCCCAGGTACGCCTCGG 15620646 Query 518337 CCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGG 518396 | || | ||||| || | || | ||| || || || | || ||| | | ||| Sbjct 15620647 CGGTCTCCTTCATCTTGGTCAACACCATGGAGGAGATCTCCTCAGGGAAGAAAGTCTTCT 15620706 Query 518397 ATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATG 518456 |||| | || | || || | | || || | |||| |||| || | || | Sbjct 15620707 TCTCATCCTTGTACGTAACCTCGATCTTGGGCTTGCCATCAACGTTAACGACCTCGAAAG 15620766 Query 518457 GCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTT 518516 |||||| |||||||| || || || |||| || | | |||||| | || | Sbjct 15620767 GCCAGTGCTTCATATCAGACTGGACGGCCGCATCATCGAATTTGCGACCAATCAGACGCT 15620826 Query 518517 TTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAA 518576 | ||||| || ||||| | |||||| || || || | || | ||||| || || |||| Sbjct 15620827 TAGCATCGAAGATAGTTTGGGTTGGGTTCATGGCCACCTGGTTCTTGGCGGCGTCACCAA 15620886 Query 518577 TCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCAT 518636 ||| | | || ||||| || || | |||||||||||| || || |||||||| ||||| | Sbjct 15620887 TCAAACGCTCCGTCTCCGTGAAGGCAACATATGATGGGGTGGTACGATTACCCTGATCGT 15620946 Query 518637 TCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTA 518696 | ||||| || ||||| || |||| || | ||||| || ||| | ||||| || | Sbjct 15620947 TGGCAATGATCTCAACCTTGCCATGCTGGAACACACCCACGCAAGAGTAGGTTGTGCCCA 15621006 Query 518697 AATCAATACCAATAGC 518712 |||||||||||| ||| Sbjct 15621007 AATCAATACCAACAGC 15621022 Score = 105 bits (116), Expect = 5e-17 Identities = 450/700 (64%), Gaps = 17/700 (2%) Strand=Plus/Minus Query 518024 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 518083 || || || || || || |||| | ||||| ||| | || ||||| |||| || || Sbjct 7323664 TTGTCGAAGTCCTCTCCGCCCAGATGAGTATCTCCAGCAGTGGCTCTCACTTCAAACAGA 7323605 Query 518084 ---CCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140 || || || | | || || | ||||| ||| || ||||||| || || || Sbjct 7323604 GAGCCCTCGTCGATGGTCAGAATTGACACATCGAAGGTGCCGCCACCCAAGTCGAATATT 7323545 Query 518141 AGTACATTCATTTCTTTGTCTTGG---TTTTTATCAAGACCATACGCAAAAGCAGCAGCA 518197 || ||||| ||| | ||| | || || || | ||||| || | ||| || ||| Sbjct 7323544 AGAACATTGCGTTC---GCCTTTGAGATTCTTGTCCAAGCCATAGGCCAGAGCTGCTGCA 7323488 Query 518198 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 518257 || || ||||| || || | || || || || || || || || || ||||| || Sbjct 7323487 GTGGGCTCATTGATGATGCGCAGCACGTTCAGCCCGGCGATGGCACCGGCGTCTTTGGTT 7323428 Query 518258 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCT 518317 ||||| | || || || || || || ||||| ||||| || ||||| || | | Sbjct 7323427 GCTTGACGCTGCGAGTCATTGAAGTAGGCAGGCACAGTGATGACGGCGTCTCTGATGGTG 7323368 Query 518318 TTACCAATATAAGCGCTTGCCGTTTGTTTCAT-TTTACTTAAAATCATTGATGAAATTTG 518376 | || | ||||| ||||| | ||||| ||||| | || ||| || || | Sbjct 7323367 GTGCCCAAGTAAGCTTCGGCCGTCTCCTTCATCTTTACC-AGAACCATCGAACTGATCTC 7323309 Query 518377 TTCTGGGGAATATTGCTTGGATTCAT-TTTGATAT-GATACTTCAAAATATGGTTTATTA 518434 || || | | | |||| ||| ||||| | || | || | | |||||| Sbjct 7323308 CTCCGGCGCAAAGCGCTTCTGTTCGCCTTTGAACTCGACATTT--ATCTTTGGTTTGCCG 7323251 Query 518435 CCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGG-TCATT 518493 | | || | ||||| |||||||||| ||||| || |||| ||| || |||| Sbjct 7323250 CAGTCGTTGACCACTTTGAATGGCCAGTGCTTCATGTCGCTCTGAAT-CTTCGGATCATC 7323192 Query 518494 AAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGC 518553 | | | | ||||| || || || ||||| || | ||| || ||||||| || || | Sbjct 7323191 ATATTTACGTCCAATCAAACGCTTCGCATCGAAGACAGTGTTACTTGGATTCATGGCCAC 7323132 Query 518554 TTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGG 518613 ||| | ||||| || |||||||||| || | || ||||||| || || || Sbjct 7323131 TTGGTTCTTGGCCGCGTCTCCAATCAACCTCTCCGAGTCAGTAAATGCCACGTAGCTGGG 7323072 Query 518614 AGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACC 518673 || ||||| || || || || || || || || || || || || | || | ||||| Sbjct 7323071 CGTGGTGCGGTTGCCCTGGTCGTTGGCTATTATCTCCACCTTGCCGTGCTGGAAAACACC 7323012 Query 518674 TACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 518713 ||||| | || ||||| || ||||||||||| ||| Sbjct 7323011 AACACAGGAGTAGGTGGTTCCCAAGTCAATACCAATTGCA 7322972 Score = 105 bits (116), Expect = 5e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 518555 TGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGA 518614 |||| ||| |||||||| ||||| || | ||||| || |||| | ||||| || || Sbjct 8253933 TGATTTTTAGCTGCATCGCCAATTAGGCGCTCTGTGTCGTTAAAGGCCACATACGAGGGC 8253992 Query 518615 GTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCT 518674 || || ||||| ||||||||||| |||||||| ||||||||| || ||||| ||||| Sbjct 8253993 GTCGTCCGATTGCCTTGATCATTGGCAATAATCTCAACTTTATTGTTCTGCCAAACACCC 8254052 Query 518675 ACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 518712 || || | || || || | ||| |||||||| || Sbjct 8254053 ACGCAGGAGTAGGTGGTGCCCAGATCGATACCAATTGC 8254090 Score = 100 bits (110), Expect = 2e-15 Identities = 206/304 (68%), Gaps = 7/304 (2%) Strand=Plus/Plus Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074 || || ||||| || ||||| || || |||| | |||| |||| || || | ||| Sbjct 8252878 ACCAGCCGATTGTCGAAATCCTCGCCGCCCAGATGCGTATCACCTGCTGTCGCCTTCACT 8252937 Query 518075 TGGAAAAG---TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATA 518131 | ||| || ||| || || | || | | | || ||| ||| || || || | Sbjct 8252938 TCGAACAGCGATCCCTCGTCGATGGAGAGTATGGACACGTCAAAGGTGCCGCCGCCTAAG 8252997 Query 518132 TCAAAAATAAGTACATTCATTTCTTTGTCTT--GGTTTTTATCAAGACCATACGCAAAAG 518189 || || || || ||||| | || | ||| | ||||| || || ||||| || | | Sbjct 8252998 TCGAAGATCAGCACATT--TCGCTCTCCCTTCAGATTTTTGTCCAGGCCATAGGCGAGGG 8253055 Query 518190 CAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCAT 518249 |||| || || || ||||| ||||| | || ||||| | ||| || || || |||| Sbjct 8253056 CAGCCGCCGTCGGCTCATTGATAATGCGCAGCACATTCAAACCGGCTATGGAGCCAGCAT 8253115 Query 518250 CTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAG 518309 ||||||| ||||| | || |||||||| ||||| || || || ||||| || ||||| Sbjct 8253116 CTTTAGTCGCTTGGCGCTGGGAATCGTTGAAATACGCCGGCACCGTAATGACAGCATCCT 8253175 Query 518310 TTAC 518313 |||| Sbjct 8253176 TTAC 8253179 >seq5628 Length=5534 Score = 98.7 bits (108), Expect = 8e-15 Identities = 126/170 (74%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 870799 TATT-GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGAT 870857 |||| || || | |||||||||||| || || ||| |||||||| |||| |||||| | | Sbjct 1919 TATTAGTTGACTTTTCTTCTCCAAACATCGCAAAACAAATGCATGTTGGTCATTTACGTT 1860 Query 870858 CAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGA-CACGATGTTTAT 870916 | || || ||||| || || || |||||| | | ||| | | || | || || ||| | Sbjct 1859 CCACCATAATTGGCGAGTCAATCTGTAGGCTTCTTGAATT-TCTGCAACATGACGTTATT 1801 Query 870917 CGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 870966 || || |||||| | || ||||||||||| || || || ||| | || || Sbjct 1800 CGCATCAATCATCTTGGGGATTGGGGAACGCAGTTTGGCATGCTCATAGC 1751 >seq6838 Length=24764193 Score = 96.9 bits (106), Expect = 3e-14 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167 ||||| ||| || || |||| |||||| || || |||||| ||| || | | | Sbjct 17750535 ACATCGAAGGTGCCGCCGCCCAGATCAAAGATCAGCACATTCCGTTCACTGCCGCCCTGT 17750594 Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 || || || || || |||| || || || ||||| ||||| || || | || ||||| Sbjct 17750595 TTGTCCAGGCCGTAGGCAATGGCCGCCGCCGTTGGCTCATTGATGATGCGCAGCACATTG 17750654 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 || || || || || ||||| || ||||| || || || ||||| || || || || Sbjct 17750655 AGTCCGGCTATGACGCCCGCATCCTTGGTGGCCTGCCTCTGCGAATCATTGAAGTAGGCG 17750714 Query 518288 GGAACAGTAATAACGGCATCAGT 518310 || ||||| ||||||||||| || Sbjct 17750715 GGCACAGTGATAACGGCATCGGT 17750737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780482927045746