Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq6840 125 9e-24 >seq6840 Length=32352404 Score = 125 bits (138), Expect = 9e-24 Identities = 379/574 (66%), Gaps = 10/574 (2%) Strand=Plus/Plus Query 112082 GTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140 |||| ||||||||||| | || | ||||| || ||||| || ||||| | ||||| | Sbjct 31471857 GTGCACGCGATCTCTTTTTTGCATTGTGGATACCTGATCTTTTTATGAAACGTGTTGAAG 31471916 Query 112141 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGG 112200 | || | ||||| | | |||||| | || || || ||| | |||| || Sbjct 31471917 CTAATGAAGACTGGTCATTGATGTGTCCACATAAATGCCCTGGCCTCCCAGATGTTTGGG 31471976 Query 112201 GTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGG 112260 |||| || |||||| |||||| | || || || ||| | || |||| | ||| Sbjct 31471977 GTGAAGATTTTGAAAACCTCTATATCAAATATGAACGAGAGGGACGAGCGAAT-CGAGTT 31472035 Query 112261 -TGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 112319 | |||| | | ||| || || || | |||||| ||||||||||| || Sbjct 31472036 ATTAAAGCTCAATCTCTTTGGTTTGCCATCATCGAATCTCAAGTAGAGACTGGTACTCCT 31472095 Query 112320 TATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 112379 || ||| | | || ||| | |||||| ||| || || ||| | ||| | || || Sbjct 31472096 TACATGTTATTTAAGGACTCTTGTAACAGAAAAAGCAACCAACAAAATGTTGGAACTATA 31472155 Query 112380 AAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 112439 || | || || || |||||||| | |||| | | | |||||| | |||||| Sbjct 31472156 AAATGCAGTAATCTGTGCACAGAAATAGTTGAATATTCGGCACCAGATGAAATAGCTGTG 31472215 Query 112440 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGAT 112499 ||||| | || |||||||| || | || ||| || ||| || ||| | | ||| Sbjct 31472216 TGTAATTTGGCGTCAATCGCACTTAATATGTTTGT-GACGCAG-GAGAAA-TCTTATGAC 31472272 Query 112500 TATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGAT 112559 | | |||| || | || || || |||| || || |||||| |||| | | | |||||| Sbjct 31472273 TTTAAAAAGCTTAAAGATGTAACTAAAATCGTTACGAAAAACTTAAATAAAATAATTGAT 31472332 Query 112560 AGAAATTTTTACCCCGTTG--AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 112617 | ||||| || ||| ||| ||| ||| ||||||||| | | |||||||| |||| Sbjct 31472333 ATAAATTACTA-CCCTTTGCCAGA-AGCTAAAAAATCTAATTTACGTCACCGTCCTATTG 31472390 Query 112618 GTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT 112651 || | || |||||||| | ||||| | ||| || Sbjct 31472391 GTATTGGAGTCCAAGGGTTTGCGGACGCATTAAT 31472424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620689318765520