Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq6840 96.9 4e-15 seq6838 86.0 7e-12 >seq6840 Length=32352404 Score = 96.9 bits (106), Expect = 4e-15 Identities = 234/348 (67%), Gaps = 11/348 (3%) Strand=Plus/Plus Query 169182 AGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACCATAG 169241 || ||||| || ||||| ||||| | ||| ||||||||| ||||||| ||||| Sbjct 29141782 AGGCCCTTAATATGAGAGCCATCCTGATCCTGATCTGTCATGATCATAACTTTGCCATAA 29141841 Query 169242 CGAAG----TTCAGAAACATCT-TGGT--AGTCTTT-TCCTTGT--TGAAGACCCAAGAT 169291 || | |||||| |||| |||| | | ||| | ||| | || | || | || Sbjct 29141842 CGCAACGTCTTCAGAT-CATCCATGGTCAAATATTTCTTCTTATACTGCAAGCCAATAAT 29141900 Query 169292 CTTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGCCACTGAAGCGTCGCGGAC 169351 ||| |||| |||| ||| ||| ||||||||| | | ||| || || || Sbjct 29141901 CTTGCATAGATTATTGATCTCAGCATTTTCTGTGAGCTGCTTAAAGGTAGCCTCTCGCAC 29141960 Query 169352 ATTCTTACACTTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAG 169411 |||| ||| ||||| | ||||||||||| |||| || |||||||| || | Sbjct 29141961 ATTCAGCAGCTTACCACGTAATGGAAAGACGCCGTAGTAATTACGTCCAATCACACCTAA 29142020 Query 169412 ACCCGCGACCGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTTTCC 169471 || | || || | | ||| ||||| |||||||| |||| |||||||||||| || Sbjct 29142021 CCCGGACACGGCCAATGATTTGGCTGAGTCACCCTCGGTGAGAATGAGGGTACAATTGAT 29142080 Query 169472 AGATTGCGCCGTACCCGCCTTGTTTGCGTCGTCCAACTTGGGAATACC 169519 ||| | | ||||| |||| ||| || || || || ||||| || || Sbjct 29142081 AGAGTTCTTGGTACCTGCCTCGTTGGCATCTTCTAATTTGGGTATGCC 29142128 >seq6838 Length=24764193 Score = 86.0 bits (94), Expect = 7e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 9366 CCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCA 9425 ||||| || || || || |||||||| | ||| || || || | || || || || Sbjct 3247537 CCCACAGCGTCGATTTCGTCAATGAACAAAATGCAGGGCGCATGCTTTCGTGCCATGGCA 3247478 Query 9426 AAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9485 || | |||||| || | | ||||| || ||||||||||||| ||| | || | || Sbjct 3247477 AACATATCGCGCACTCGGGACGGACCCACGCCGACAAACATCTCCAGAAACTCTGAGCCG 3247418 Query 9486 GA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9544 || || | ||||||||| ||||| | || || || |||| ||| || ||||| || Sbjct 3247417 GAGACGGT-GATGAAGGGCACATTCGCCTCGCCAGCTGTGGCCTTGGCCAGCAGAGTTTT 3247359 Query 9545 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 || ||||| ||| ||| | | | ||||||| || || |||||||| Sbjct 3247358 GCCAGTACCGGGCGGACCGGTCAACATGGCACCCTTCGGTATTTTGGCGCC 3247308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589930349266840