Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq6840 102 5e-17 seq6836 95.1 8e-15 seq6838 93.3 3e-14 seq5292 82.4 5e-11 >seq6840 Length=32352404 Score = 102 bits (112), Expect = 5e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||||||||| ||||| || || | ||| |||| ||| Sbjct 311351 ACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 311292 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || | || ||||| ||| | || | ||||| ||||| Sbjct 311291 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGTGGGATTCCCTCTTTGTCCTGG 311232 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | ||| || ||| || || | ||| ||||| | Sbjct 311231 ATCTTGGCCTTGAC--ATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTAATGGTCT 311174 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || |||||||| || || ||||| ||||| || Sbjct 311173 TGCCGGTGAGAGTTTTAACGAAGATTTGCATTTT 311140 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || ||||| || ||||| ||||| ||||| | || |||| ||| Sbjct 15336137 ACCAAGTGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTCC 15336196 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | || || || ||||| ||||| || ||||| ||| | || | || || ||||| Sbjct 15336197 AATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGG 15336256 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCG-ATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| |||||| || || || | || | ||| || || || | || ||||| Sbjct 15336257 ATCTTGGCTTTGAC--ATTCTCGATGGTATCCGACGGT-TCGACCTCAAGAGTGATGGTC 15336313 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| || || || |||||||||||||| Sbjct 15336314 TTACCCGTTAGGGTTTTAACAAAGATCTGCAT 15336345 >seq6836 Length=4525533 Score = 95.1 bits (104), Expect = 8e-15 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | ||| |||| |||||||| || || || || Sbjct 2204894 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAG 2204953 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| ||| | || | ||||||||||| ||||| || || || Sbjct 2204954 ATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTAAC--AT 2205011 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || || ||| || || | ||| ||||||||||| || | |||||| | Sbjct 2205012 TCTCAATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGGTTTTTCCAGTCAAAGTCTTGA 2205071 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 2205072 CGAAGATCTGCAT 2205084 Score = 95.1 bits (104), Expect = 8e-15 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | ||| |||| |||||||| || || || || Sbjct 2205122 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAG 2205181 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| ||| | || | |||||||| || ||||| ||||| || Sbjct 2205182 ATCAGACGCTGCTGATCTGGAGGAATACCCTCCTTATCCTGGATCTTGGCCTTGAC--AT 2205239 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || || ||| || || | ||| ||||||||||| || | |||||| | Sbjct 2205240 TCTCAATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGGTTTTTCCAGTCAAAGTCTTGA 2205299 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 2205300 CGAAGATCTGCAT 2205312 Score = 95.1 bits (104), Expect = 8e-15 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | ||| |||| |||||||| || || || || Sbjct 2205578 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAG 2205637 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| ||| | || | ||||||||||| ||||| || || || Sbjct 2205638 ATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTAAC--AT 2205695 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || || ||| || || | ||| ||||||||||| || | |||||| | Sbjct 2205696 TCTCAATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGGTTTTTCCAGTCAAAGTCTTGA 2205755 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 2205756 CGAAGATCTGCAT 2205768 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| ||||| || || | ||| |||| ||| Sbjct 2204648 ACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 2204707 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || ||||| ||| | || | ||||||||||| Sbjct 2204708 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGG 2204767 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || || | | || | || || ||| || || | ||| |||||||| Sbjct 2204768 ATCTTGGCCTTAACATTTTCAATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGGTTTTG 2204827 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | |||||| || ||||||||||| Sbjct 2204828 CCAGTCAAAGTCTTGACGAAGATCTGCAT 2204856 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | ||| |||| |||||||| || || || || Sbjct 2205806 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAG 2205865 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| ||| | || | |||||||| || ||||| ||||| || Sbjct 2205866 ATCAGACGCTGCTGATCTGGAGGAATACCCTCCTTATCCTGGATCTTGGCCTTGAC--AT 2205923 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || || ||| || || | ||| |||||||| || || | |||||| | Sbjct 2205924 TCTCAATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGGTTTTGCCAGTCAAAGTCTTGA 2205983 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 2205984 CGAAGATCTGCAT 2205996 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | ||| |||| |||||||| || || || || Sbjct 2206262 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAG 2206321 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| ||| | || | ||||||||||| ||||| || || || Sbjct 2206322 ATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATCTTGGCCTTAAC--AT 2206379 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || || |||||| || | || ||||| || || || | |||||| | Sbjct 2206380 TCTCAATGGTGTCCGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTGA 2206439 Query 34969 CAAAGATCTGCATATT 34984 | |||||||||||||| Sbjct 2206440 CGAAGATCTGCATATT 2206455 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | ||| |||| |||||||| || || || || Sbjct 2206034 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAG 2206093 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| ||| | || | ||||||||||| ||||| || || || Sbjct 2206094 ATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATCTTGGCCTTAAC--AT 2206151 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || || |||||| || | || ||||| || || || | |||||| | Sbjct 2206152 TCTCAATGGTGTCCGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTGA 2206211 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 2206212 CGAAGATCTGCAT 2206224 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | ||| |||| |||||||| || || || || Sbjct 2205350 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAG 2205409 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || || || ||| | || | ||||||||||| ||||| || || || Sbjct 2205410 ATCAGACGCTGTTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTAAC--AT 2205467 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || || || || || | ||| |||||||| || || | |||||| | Sbjct 2205468 TCTCAATGGTGTCCGAGGGTTCGACCTCCAAGGTGATGGTTTTGCCAGTCAAAGTCTTGA 2205527 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 2205528 CGAAGATCTGCAT 2205540 >seq6838 Length=24764193 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || ||| ||||| ||||| ||||| || | | | || | || || Sbjct 2124017 AACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGACCGTCTTC 2123958 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||| || || ||||| || || || || ||||| ||| | || | || |||||||| Sbjct 2123957 CAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTG 2123898 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 |||||| ||| ||| | | || | || | ||| || || | || ||||| || Sbjct 2123897 AATCTTGGCTTTCACGTTTTCAATGGTATCGGAAGGCTCCACCTCCAGAGTGATGGTCTT 2123838 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || |||||||| ||||| |||||| Sbjct 2123837 GCCAGTCAGGGTCTTCACGAAGATTTGCATA 2123807 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | || ||| ||||||||||| || || || | | | || |||| || Sbjct 2124929 AACCAAGTGGAGGGTCGATTCCTTCTGAATGTTGTAATCAGACAAGGTGCGACCATCTTC 2124870 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||| || || ||||| || || || || ||||||||| | || | || |||||||| Sbjct 2124869 CAGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTG 2124810 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 |||||| || ||| | | |||| || | ||| || || | || ||||| || Sbjct 2124809 AATCTTAGCCTTCACGTTTTCAATCGTGTCGGAAGGCTCCACCTCCAGAGTGATGGTCTT 2124750 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || ||||| || ||||| |||||| Sbjct 2124749 GCCAGTCAGGGTCTTAACGAAGATTTGCATA 2124719 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | || ||| ||||||||||| || || || | | | || |||| || Sbjct 2124473 AACCAAGTGGAGGGTCGATTCCTTCTGAATGTTGTAATCAGACAAGGTGCGGCCATCTTC 2124414 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||| || || ||||| || || || || ||||| ||| | || | || |||||||| Sbjct 2124413 CAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTG 2124354 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 |||||| || || || || || | || | ||| || || | ||| |||||| Sbjct 2124353 AATCTTAGCCTTCAC--ATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTT 2124296 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || || |||||||| ||||| |||||| Sbjct 2124295 TTGCCAGTCAGGGTCTTCACGAAGATTTGCATA 2124263 Score = 86.0 bits (94), Expect = 4e-12 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| |||| || ||| ||||| || || ||||| || | | | || |||| ||| Sbjct 2122420 ACCAAATGAAGGGTCGATTCCTTCTGGATATTGTAGTCAGACAAGGTGCGACCATCTTCC 2122361 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || ||||| || || || || ||||| ||| | || | || |||||||| | Sbjct 2122360 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGA 2122301 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| || || || || || | || | |||||| || | || ||||| | Sbjct 2122300 ATCTTAGCCTTCAC--ATTCTCAATGGTATCGGAAGGCTCAACCTCCAGAGTGATGGTCT 2122243 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCGTA 34988 ||||||| | ||| || || ||||||||||| || ||| Sbjct 2122242 TTCCCGTCAAAGTTTTAACGAAGATCTGCATTTTGGTA 2122205 >seq5292 Length=4599 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || ||||| || | | || |||| ||||| || || |||||||| Sbjct 216 TCCTTCTGGATATTGTAGTCAGACAAAGTGCGGCCATCTTCCAGTTGCTTGCCGGCAAAG 157 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| ||| | || | |||||||| || |||||| || ||| Sbjct 156 ATCAGACGCTGCTGATCTGGTGGAATTCCCTCCTTATCTTGAATCTTGGCCTTAACGTTC 97 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | |||||| || | || ||||| |||||||| | ||| || || Sbjct 96 TCAATGGTATCGGAAGGCTCAACCTCCAGAGTGATGGTCTTTCCCGTCAAAGTTTTAACG 37 Query 34971 AAGATCTGCATATTCGTA 34988 ||||||||||| || ||| Sbjct 36 AAGATCTGCATTTTGGTA 19 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324606533775048