Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq6840 477 1e-129 >seq6840 Length=32352404 Score = 477 bits (528), Expect = 1e-129 Identities = 1216/1858 (65%), Gaps = 16/1858 (1%) Strand=Plus/Minus Query 46980 ACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCAGTCTTT 47039 ||||| || | || | |||| ||||| |||||| || | ||||||||| || ||||| Sbjct 31473141 ACAGTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTA 31473082 Query 47040 AAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAA 47099 | ||| ||||| ||| ||||| || |||||||| |||| | ||||| | Sbjct 31473081 AGACCCGCTTTCCATGAATAAAAATGGATTGATGTTAATTTTCCATAATTGGGTTCAGCT 31473022 Query 47100 ATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCT 47159 | ||||||||| | ||| ||||| ||||||||||| || ||||||||||| ||||| | | Sbjct 31473021 ACATGAATATTGAAAGACTGACTTTGATCAATAAACGCTCCTCTATCAGCCGCCATTTTT 31472962 Query 47160 AAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGG 47219 | | | | || || ||||| || |||||||| | | ||| |||| || Sbjct 31472961 ATAGTTGATTTAACTGAAATTTCCCACACAGTTTTATACAAATCACGAATTTCTTTAGGA 31472902 Query 47220 A--GATT-AGTATTTTGAATAGATCCTCCgttttctataattttgttttttaattcattt 47276 | |||| | ||||||| || || || | || ||| |||| ||||| | || | Sbjct 31472901 ATAGATTCAATATTTTGTATTGAACCACGACTTGATATTATTTGATTTTTCATCTCGTCA 31472842 Query 47277 gaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTGAAATTCT 47336 ||| | | |||||||||| | | || | || || | |||||| || Sbjct 31472841 TCCCACAAATCAAGTTCAGTTAAATCACGGAGTAAGTGGTGGTTCACTACTTGAAACTCG 31472782 Query 47337 CCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTT 47396 ||||| | ||||| | | || || || ||||| || || | || |||||||| Sbjct 31472781 CCAGACAATACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTATTG 31472722 Query 47397 CCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACT 47456 || || ||||| || || |||||||||||||||| || | | ||| |||||| || Sbjct 31472721 CCCAATATTTGCGCTGTAGATGCTGTAGGCATGGGAGCGATGAGTAAAGAATTTCTGACA 31472662 Query 47457 CCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACA 47516 || | || ||| ||||| ||||||||||||| ||| Sbjct 31472661 CCGTGTTGCGCTATAGATTTTTTAAGAGCATTCCAGTCCCAAAGATCTGTTGGTGATTTG 31472602 Query 47517 TTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAA 47576 ||||| | |||||| || | ||||||||| |||| ||| ||| || || | ||| Sbjct 31472601 TTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTGCCAACGTAAGTCTCATAT 31472542 Query 47577 GGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATATTGTTTCA 47636 || || | | | ||| | ||||||||| |||||||| || | ||| ||||| ||||| Sbjct 31472541 GGTCCATCTCTCTGAGCCAATTCACAACTGGCTTCCAAAGCTCCATAGTATATAGTTTCG 31472482 Query 47637 AATATTT--TTATGTT-TAGATTCCTTGCTTCTGATGA--TTCAAAAGGATANNNNNNNN 47691 || || | | || | |||| |||||| | || ||| | | ||| Sbjct 31472481 AAAATCTGCTGATTTAATAGAAA---TGCTTC--ACGACTTTCGTAGGAATACCGCATTA 31472427 Query 47692 NNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAG 47751 |||| || || || ||||| || ||||||||||| || | ||| | ||||| Sbjct 31472426 ATATTAATGCGTCCGCAAACCCTTGGACTCCAATACCAATAGGACGGTGACGTAAATTAG 31472367 Query 47752 AAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNN 47811 | | ||||||||| || || || | |||||||| || |||||||||| Sbjct 31472366 ATTTTTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTATTTAAGTTTTTCG 31472307 Query 47812 NNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAAC---TTGTTATTTATAACAA 47868 | ||| | | || ||||| ||| | || | | | |||| Sbjct 31472306 TAACGATTTTAGTTACATCTTTAAGCTTTTTAAAGTCATAAGATTTCTCCTGCGTCACAA 31472247 Query 47869 ACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATT 47928 || |||||||||| || || || | |||||| ||||||| |||| ||| | ||||| Sbjct 31472246 ACATATTAAGTGCGATTGACGCCAAATTACACACAGCTATTTCATCTGGTGCCGAATATT 31472187 Query 47929 GTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNN 47988 | |||||| | || ||||||| ||||| ||||| || | |||||| || || | Sbjct 31472186 CAACTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTT 31472127 Query 47989 NNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAA 48048 ||||||| | |||||| | | ||| |||| || ||||| |||| |||||||| | Sbjct 31472126 TTCTGTTACAAGAGTCCTTAAATAACATGTAAGGAGTACCAGTCTCTACTTGAGATTCGA 31472067 Query 48049 TGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGT 48108 |||| | ||||| || ||| || ||||| | ||| || |||| | Sbjct 31472066 TGATGGCAAACCAAAGAGATTGAGCTTTAATAACTCGATTCGCTCGTCCCTCTCGTTCAT 31472007 Query 48109 ATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCAT 48168 |||| |||| | || ||||| || || || | |||| | ||||| |||| || Sbjct 31472006 ATTTGATATAGAGGTTTTCAAAATCTTCACCCCAAACATCTGGGAGGCCAGGGCATTTAT 31471947 Query 48169 TAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTA 48228 ||||||||||||||||| || |||| | || || | ||||||| | ||| |||| Sbjct 31471946 GTGGACACATCAATGACCAGTCTTCATTAGCTTCAACACGTTTCATAAAAAGATCAGGTA 31471887 Query 48229 TCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAA 48288 |||| | || | ||| | ||| | | | |||| || || ||| |||| |||||| Sbjct 31471886 TCCACAATGCAAAAAAGAGATCGCGTGCACGATGTTCCTCCTTTCCAGTATTTTTTTTAA 31471827 Query 48289 GTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTG 48348 | || | ||| || | | ||| | ||||| || || | |||||| || | | | || | Sbjct 31471826 GGTCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCCAGATATATAGCAAATGCTCCAG 31471767 Query 48349 GTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTG 48408 ||| |||| ||| || ||||| | ||| | || ||| ||| | ||||||||||||| Sbjct 31471766 GTCTTTTACCACCGCCCTGATCAACATAGCGCGCGACATTATTAAATACTCTTAACATTG 31471707 Query 48409 GGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATAT 48468 | || | |||||||| | || || ||||| |||| | | || |||||| ||| Sbjct 31471706 GTACTAATCCATTTGAAGTGCCGTTCGTTCCACAAATTGAGGTGCCTTTAGCTCGAATAC 31471647 Query 48469 TACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGG 48528 || || || || ||||||||| || ||||| | || || ||| || | Sbjct 31471646 AGTGAACATTAAGTCCAATTCCACCTGCCGACTTTGATATCATTGCGCATTGTTCAACTG 31471587 Query 48529 TATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTT 48588 | | |||| ||||| || |||| | ||| |||| |||||||| ||||| || Sbjct 31471586 ATTTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAAAAGAAAACATGAAGACAATT 31471527 Query 48589 GCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTG 48648 | ||| || || ||| | ||| | ||||| ||||||||| |||| | ||| | Sbjct 31471526 GTGGACGATTTGTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACGCTCAG 31471467 Query 48649 ATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATA 48708 ||| ||| || || ||||||| ||||||| ||||| |||||||||||| | | Sbjct 31471466 ATAGCAAATTGTAGGTTTCAACTGCAGAATCAATATCTTCGCCATGTATACCTATGGCGA 31471407 Query 48709 CACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATG 48768 ||||||||| || || || |||||||| | ||||| ||||||||| | | ||| | Sbjct 31471406 CACGCATTAGCAAATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAAATACG 31471347 Query 48769 ATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826 | || | ||| || || ||||| ||||| ||| || ||| ||||| ||||| Sbjct 31471346 ACCGCTCAAGTGTCTTGAATCCAAAGTAGTTATATCCGAAATCGCGATCATATATAAT 31471289 Score = 89.7 bits (98), Expect = 6e-13 Identities = 119/164 (73%), Gaps = 6/164 (4%) Strand=Plus/Minus Query 48920 AAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAGC 48979 ||||| |||||| ||||||||||||||||| || | | ||||| || || | | ||| Sbjct 31468983 AAATACTTTTTTAGTTTCTTTATGAAGATTGGAAACTGCGATTCTTGCCGCCAGAAGAGC 31468924 Query 48980 ATAATCTGGATGAATTGTTGTACATGTACTAGAT---ATTTCTGCTGCTAATATATCTAA 49036 ||| || | ||||| ||||| | ||| | | |||||||| ||||| |||| || Sbjct 31468923 ATAGTCCGCATGAAGGGTTGT---TAAACTGGCTGCAATTTCTGCGGCTAAGTTATCCAA 31468867 Query 49037 TTCTTTAGTAGTTACACCTGTATATATTCCTTGAATAACTTTCA 49080 ||||| |||| ||||| || | ||| | ||||||||||| Sbjct 31468866 TTCTTGTGTAGACACACCGCAGTAGAGTCCATTAATAACTTTCA 31468823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562060732671240