Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq6839 141 7e-29 seq6840 140 3e-28 seq5292 125 6e-24 seq6838 120 2e-22 seq6836 113 4e-20 >seq6839 Length=26866924 Score = 141 bits (156), Expect = 7e-29 Identities = 204/286 (71%), Gaps = 4/286 (1%) Strand=Plus/Minus Query 13651 ATTGAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCG 13710 || ||| || || || || |||| | | ||||| | || || |||||| | || | || Sbjct 677741 ATCGAACTTGCGCTTGCAGCCTTGATAGTTCATATAGCGAATCTTACCAAATATCGCGCG 677682 Query 13711 CTCCATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTT 13770 |||| ||||| | | |||||| | || | || |||||||||||||| | || || || Sbjct 677681 CTCCTTCCAGCCTTGGTCGTGAATCCCACCGATGGACCACATGCAACCAACGTAGCCATT 677622 Query 13771 GGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATTAAAGCCAC 13830 |||||||||||||||| |||||| |||||||| || ||||| | | | |||| Sbjct 677621 CGGATCGCGTCCATCCAGACTGTACTTGTCGTTCAATAATATG--CTATACTCAAGCGCT 677564 Query 13831 TGT--AGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATATCCG 13888 ||| |||| | ||| ||||| || ||||| |||||||| || | || | | ||| Sbjct 677563 TGTTCCGGCGTTTCGGTCCACTCTAAAATCTTTTTGGCCCAATACATGCGCAGAAACCCG 677504 Query 13889 TGCATTTTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCACA 13934 ||||||||||||| | | ||||| ||| || | |||||||| Sbjct 677503 TGCATTTTGCCTTCCTTGACCAGCTGCAGCTGGGCCGAGTTCCACA 677458 >seq6840 Length=32352404 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || | ||| || |||||||| || ||||| |||| | ||| | |||| ||| Sbjct 15336137 ACCAAGTGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTCC 15336196 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 |||||||| || ||||| || | |||||| ||||| || ||||| |||||||| || || Sbjct 15336197 AATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGG 15336256 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| ||| | || | || || |||| ||| || |||||||||| || || Sbjct 15336257 ATCTTGGCTTTGACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTA 15336316 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 || |||| ||||| ||||| |||||||| || Sbjct 15336317 CCCGTTAGGGTTTTAACAAAGATCTGCATTGT 15336348 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || || || || || || ||||| |||| | ||| | |||| |||| ||||| || Sbjct 311339 GTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCG 311280 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 || || ||||||||||| ||||| || || || || ||||| || || || || || Sbjct 311279 GCGAAGATCAAACGCTGCTGATCTGGTGGGATTCCCTCTTTGTCCTGGATCTTGGCCTTG 311220 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 ||| | || | |||||||| | || || || | || | || |||||||| | |||| Sbjct 311219 ACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTAATGGTCTTGCCGGTGAGAGTT 311160 Query 101453 TTTACAAATATCTGCAT 101469 || || || || ||||| Sbjct 311159 TTAACGAAGATTTGCAT 311143 >seq5292 Length=4599 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||||||||| || || || || |||||||| || | | ||| | | |||| |||| ||| Sbjct 229 ATGAAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAAAGTGCGGCCATCTTCCAGTTG 170 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || ||||| |||| |||||| ||||| || ||||| || || ||||||||||| || Sbjct 169 CTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGAATTCCCTCCTTATCTTGAATCTT 110 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || || | || | || || || | || || || ||||||| || || || || Sbjct 109 GGCCTTAACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAGAGTGATGGTCTTTCCCGT 50 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 |||||||| || || |||||||| Sbjct 49 CAAAGTTTTAACGAAGATCTGCAT 26 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || |||||||||||||| || ||||| || ||||| || | | || | |||| ||| Sbjct 1830 ACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGACCATCTTCC 1771 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||| || ||||| |||| |||||| ||||| || ||||| ||||| || || ||| Sbjct 1770 AGTTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGA 1711 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | || || || | ||||| || ||||||| || ||| Sbjct 1710 ATCTTAGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAGAGTGATGGTCTTG 1651 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || || || || ||||| Sbjct 1650 CCAGTCAGGGTCTTCACGAAGATTTGCAT 1622 >seq6838 Length=24764193 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||||||||| ||||| || || |||||||| || | | || | |||| ||| Sbjct 2122420 ACCAAATGAAGGGTCGATTCCTTCTGGATATTGTAGTCAGACAAGGTGCGACCATCTTCC 2122361 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||| || || || |||| |||||| ||||| || ||||| ||||| || || ||| Sbjct 2122360 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGA 2122301 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | || || || | || || || ||||||| || || Sbjct 2122300 ATCTTAGCCTTCACATTCTCAATGGTATCGGAAGGCTCAACCTCCAGAGTGATGGTCTTT 2122241 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||||||| || || |||||||| Sbjct 2122240 CCCGTCAAAGTTTTAACGAAGATCTGCAT 2122212 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || |||||||||||||| || ||||| || ||||| || | | || | |||| ||| Sbjct 2125156 ACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGACCATCTTCC 2125097 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||| || ||||| |||| |||||| ||||| || ||||| ||||| || || ||| Sbjct 2125096 AGTTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGA 2125037 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | || || || | ||||| || ||||||| || ||| Sbjct 2125036 ATCTTAGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAGAGTGATGGTCTTG 2124977 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || || || || ||||| Sbjct 2124976 CCAGTCAGGGTCTTCACGAAGATTTGCAT 2124948 >seq6836 Length=4525533 Score = 113 bits (124), Expect = 4e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||||||||| || || || || || ||||| |||| | ||| | |||| |||| || Sbjct 2205337 ATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTG 2205396 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || |||| |||||||||||| || ||||| || || || || || || || Sbjct 2205397 CTTGCCAGCGAAGATCAGACGCTGTTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTT 2205456 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | ||||| || | ||| || || | |||| |||||||| || Sbjct 2205457 GGCCTTAACATTCTCAATGGTGTCCGAGGGTTCGACCTCCAAGGTGATGGTTTTGCCAGT 2205516 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 ||||| || || || ||||||||| Sbjct 2205517 CAAAGTCTTGACGAAGATCTGCATG 2205541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396245360412237