Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq6839 179 7e-40 >seq6839 Length=26866924 Score = 179 bits (198), Expect = 7e-40 Identities = 537/824 (65%), Gaps = 15/824 (2%) Strand=Plus/Plus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 || || || || ||| | ||||| |||||||| ||||| || |||| |||||| ||||| Sbjct 3409427 TGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGCGAGATCATCTCC 3409486 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCC-ATCTGTTCCAGCAG 47958 || ||| ||| || || || || || | || || || | | ||| ||| Sbjct 3409487 ATAAAGGTGAATGGATTCTTCGTATTGTAGATTT-TGCCAACACCGAGTTCCACCAACAG 3409545 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 ||||||| || | || || || | ||||| | | |||||||| || | | Sbjct 3409546 ACGATCCGCAACAAATTCAATATACTGGGACATCAATGCACAATTCATGCCAATCAAGTT 3409605 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||||||| ||| | |||||||||||| | ||| || || || ||| | |||| Sbjct 3409606 GACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCCGAGATGATCTC 3409665 Query 48079 CTTAACGCGGGACTCTGAGGGTTTG----TTGCGC-AGGTGCTTGGCATAGAGCATGCAG 48133 | | ||| || | || | | |||| | | ||| | | | ||| Sbjct 3409666 AATGATGCG-----CTCACGGCTAGGACGTTGCACCAAATGCCGGA---ACATCATCACA 3409717 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 |||||||| | |||||||| ||||| || ||| | | | ||||||||| ||||| Sbjct 3409718 GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGTCAGACCG 3409777 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||| | || | | || ||||| || || | || || |||| |||||||| Sbjct 3409778 GGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATT 3409837 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 |||||||| || |||||||| ||| ||||| || || ||| ||| ||| ||| Sbjct 3409838 CCCTCCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCGGCCTTCGATGAAATC 3409897 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373 || || |||||||| || ||||| ||||| ||||| || || | ||| ||| Sbjct 3409898 CAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAACGGCATTGAAC 3409957 Query 48374 AGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCA 48433 || | | | || || ||| || ||| ||| || |||| ||||||||| Sbjct 3409958 AGATAATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGTACATCTCC 3410017 Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493 |||||||||||||| || ||||| || || || ||||| | || || | ||| Sbjct 3410018 GAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCGGTTATTTGC 3410077 Query 48494 ACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAG 48553 || || | ||| | ||| | ||||||||||| || || ||||| ||||| |||||| Sbjct 3410078 ACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGAAGCGGCAAAG 3410137 Query 48554 AAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGT 48613 ||||| || ||||| | || ||||||||||| | || | | |||| | Sbjct 3410138 AAGGCGAGCACATGGGAGATAAAGTGGCGCTCGTTATCAGTTAAACGTGCCCAGTCGGTC 3410197 Query 48614 ACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 | ||| || || ||||| || |||||||||||||| || || Sbjct 3410198 AAGTCCTTAGAGAGATCCACCTCCTCCACAGTCCAGAATGAGGC 3410241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931453142301440