Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq6840 154 7e-33 >seq6840 Length=32352404 Score = 154 bits (170), Expect = 7e-33 Identities = 320/474 (68%), Gaps = 2/474 (0%) Strand=Plus/Minus Query 25887 TATTTGGACAGAATAAATG-CCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCT 25945 ||| |||||| | | |||| ||| || |||| ||||| | |||||| | ||| Sbjct 31471949 TATGTGGACACA-TCAATGACCAGTCTTCATTAGCTTCAACACGTTTCATAAAAAGATCA 31471891 Query 25946 GGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTT 26005 || ||||||| |||| |||| | ||| | || | ||| || ||||| ||| ||| Sbjct 31471890 GGTATCCACAATGCAAAAAAGAGATCGCGTGCACGATGTTCCTCCTTTCCAGTATTTTTT 31471831 Query 26006 TTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTA 26065 || || || || || || || | |||||||||||| || || | ||| |||||||| Sbjct 31471830 TTAAGGTCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCCAGATATATAGCAAATGCT 31471771 Query 26066 CCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAAC 26125 || |||||| || || || ||||| || || | || | ||| || ||| | ||| Sbjct 31471770 CCAGGTCTTTTACCACCGCCCTGATCAACATAGCGCGCGACATTATTAAATACTCTTAAC 31471711 Query 26126 ATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTA 26185 ||||| ||||||||| ||||| ||||| || | | ||| || ||| | | || | Sbjct 31471710 ATTGGTACTAATCCATTTGAAGTGCCGTTCGTTCCACAAATTGAGGTGCCTTTAGCTCGA 31471651 Query 26186 ATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAA 26245 ||| |||| ||| || || |||||||| ||| | ||||| || ||| || | | | Sbjct 31471650 ATACAGTGAACATTAAGTCCAATTCCACCTGCCGACTTTGATATCATTGCGCATTGTTCA 31471591 Query 26246 ACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGAT 26305 |||| | ||||| |||| || |||| || ||| | |||||| ||||| Sbjct 31471590 ACTGATTTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAAAAGAAAACATGAAGAC 31471531 Query 26306 AATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAA 26359 ||||| | | || |||| ||| | ||| | || |||| ||||||||| || Sbjct 31471530 AATTGTGGACGATTTGTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAA 31471477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253018902869075