Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq6840 136 1e-26 seq6835 102 2e-16 seq6841 98.7 3e-15 >seq6840 Length=32352404 Score = 136 bits (150), Expect = 1e-26 Identities = 611/953 (64%), Gaps = 19/953 (2%) Strand=Plus/Minus Query 155400 AATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCTG 155459 |||| ||| || || || || ||||||||||| | || || || | |||| | | Sbjct 31472421 AATGCGTCCGCAAACCCTTGGACTCCAATACCAATAGGACGGTGAC-GTAAATTAGATTT 31472363 Query 155460 CTTGTCTTCTTGTTT-GGGTAAAAATTCACATCAATAATGTTATTTAAATTT---GTAAC 155515 || ||||| | ||||| |||| | |||||| || |||||||| ||| ||||| Sbjct 31472362 TTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTATTTAAGTTTTTCGTAAC 31472303 Query 155516 CAATACCTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAA 155575 | | || ||||| ||| | || | ||||| | | ||| |||| | ||||| Sbjct 31472302 GATT---TTAGTTACATCTTTAAGCTTTTTAAAGTCATAAGATTTCTCCTGCGTCACAAA 31472246 Query 155576 CATACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATT 155634 |||| ||| | || ||||||| |||||| || || | || | || | || |||| Sbjct 31472245 CATATTAAGTGCGATTGACGCCAAATTACACACAGCTATTTCATCTGGTGCCGAA-TATT 31472187 Query 155635 CTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATT 155694 | || || || |||||| ||| | || || || || | ||| | ||||| || Sbjct 31472186 CAACTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTT 31472127 Query 155695 TACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCA 155754 | |||||||||| ||||| ||| ||||| || || || ||||| | || | || | Sbjct 31472126 TTCTGTTACAAGAGTCCTTAAATAACATGTAAGGAGTACCAGTCTCTACTTGAGATTCGA 31472067 Query 155755 GAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTG-TTGTATCTGCCTTCCGACTCA 155813 || | ||| || | || ||||| || | || || || || ||| Sbjct 31472066 TGATGGCAAACCAAAGAGATTGAGCTTTAATAA-CTCGATTCGCTCGTCCCTCTCGTTCA 31472008 Query 155814 TATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTA 155873 ||||| ||||| || || |||| ||||| || ||| || |||||||| ||| Sbjct 31472007 TATTTGATATAGAGGTTTTCAAAATCTTCACCCCAAACATCTGGGAGGCCAGGGCATTTA 31471948 Query 155874 TCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTC 155933 | || || | || ||||| || |||| | ||||| | |||||| | |||| Sbjct 31471947 TGTGGACACATCAATGACCAGTCTTCATTAGCTTCAACACGTTTCATAAAAAGATCAGGT 31471888 Query 155934 GCCCAAATAGCATAGAAAAGGTCCCTTGC-CTTTGACTCCTCATCGCCGTGATTCTTCCG 155992 ||| | ||| | || || || | ||| | || ||||| | || ||| || Sbjct 31471887 ATCCACAATGCAAAAAAGAGATCGCGTGCACGATGT-TCCTCCTTTCCAGTATTTTTTTT 31471829 Query 155993 TAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACC 156052 || || || ||||| | ||| | || ||||||||||| |||||||| || Sbjct 31471828 AAGGTCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCCAGATATATAGCAAATGCTCC 31471769 Query 156053 ATTCCTCTTGCCA---CCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCAT 156109 | || || ||| |||||||| ||||| || || ||||| || || | || ||| Sbjct 31471768 AGGTCTTTTACCACCGCCCTGATCAACATAGCGCGCGACATTATTAAATACTCTTAACAT 31471709 Query 156110 AGG-AATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAA 156168 || | |||| ||||| |||||||| || ||||| | ||| | || | |||| Sbjct 31471708 TGGTACTAAT-CCATTTGAAGTGCCGTTCGTTCCACAAATTGAGGTGCCTTTAGCTCGAA 31471650 Query 156169 CATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTA 156228 | |||| || |||||||| ||||||| | | || || || ||||||| | | Sbjct 31471649 TACAGTGAACATTAAGTCCAATTCCACCTGCCGACTTTGATATCATTGCGCATTGTTCAA 31471590 Query 156229 CAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTA 156288 | | || ||||| |||||||| |||||| | || | || ||| | || ||| | Sbjct 31471589 CTGATTTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAAAAGAAAACATGAAGACA 31471530 Query 156289 ATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAA 156341 |||| || || ||| | || || || || |||| ||||||| ||||| Sbjct 31471529 ATTGTGGACGATTTGTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAA 31471477 >seq6835 Length=4453435 Score = 102 bits (112), Expect = 2e-16 Identities = 169/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| |||||| | ||||||||| || || |||||| || ||| || ||||| ||| Sbjct 3805560 TCCATAGCCTTGATGAGACGACGCTGGATGTAGCCAGTTTCAGCTGTCTTCACAGCCGTA 3805501 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 ||||| | ||| | | || ||||| || |||||| | | ||| |||| || || Sbjct 3805500 TCAATCAAACCTTCTCTGCCGCCCATGGCGTGGAAGTAGAACTCGGACGGTGTCAGGCCG 3805441 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAG 302754 | | | | ||| |||| || || || | | ||| || || ||| |||| | || Sbjct 3805440 GCCAGATACGAGTTCTCCACAAAGCCCCTAGACTCTGGACCATAATCGTCCTTGATGAAA 3805381 Query 302755 TGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGT 302814 || ||||| || | || |||| ||||| || ||||| || || ||||||||||| Sbjct 3805380 TGCGGCAGAGTGCGCTTGCGGAAGCCATATGGTATGCGCTTGCCCTCCACGTTCTGCTGG 3805321 Query 302815 CCCA 302818 |||| Sbjct 3805320 CCCA 3805317 >seq6841 Length=34148556 Score = 98.7 bits (108), Expect = 3e-15 Identities = 151/210 (72%), Gaps = 8/210 (4%) Strand=Plus/Plus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 ||| | || ||||||||| |||||| || |||||||||||||| || || || || | Sbjct 13717829 TGGCCAATTGTCATACGAGAGGGAATGGCGTGGGGATTGATGATAATATCTGGCGCCAAT 13717888 Query 251899 CCATCAGCA-GTGAAGGGCATATCCTTTTCCT--CAATAAT-GTTTCCAATAGTTCCCTT 251954 || || ||| ||||| ||||| ||| |||| | ||| | | | ||| |||||||| Sbjct 13717889 CCCTC-GCAGGTGAACGGCATGTCC---TCCTGACGATACTGGATGCCACATGTTCCCTT 13717944 Query 251955 TTGTCCGTGACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCG 252014 || ||||||||||| |||||| || ||||| || ||| || ||| | || Sbjct 13717945 CTGCCCGTGACGAGAGGCGAACTTGTCGCCAATCTGTGGTATGCGCACGGAACGCACACG 13718004 Query 252015 AACCTTACAGAAGTTGTAACCATCACCGTT 252044 || ||| ||||| |||||||| || | ||| Sbjct 13718005 AATCTTGCAGAACTTGTAACCCTCGCTGTT 13718034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471688594727417