Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq6837 120 4e-21 seq6839 89.7 6e-12 >seq6837 Length=16943266 Score = 120 bits (132), Expect = 4e-21 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 ||||||||||||| |||||| | | ||||| || ||| | | || || ||| || Sbjct 4879772 AGAAGCGCACCGATGACATCACATCCTGGGATGCAGATTTTCTCAAAGTGGACCAGGGCA 4879713 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | || || || ||||| | ||||||||||| | || |||||| |||| || || Sbjct 4879712 CACTATTCGAACTGATCTTAGCCGCCAACTATTTGGATATCAAGGGGTTGCTGGAACTAA 4879653 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 |||||| | |||||||| ||||| ||||||||| | |||||||| ||||| || || | Sbjct 4879652 CCTGCAAGACCGTGGCCAATATGATTAAGGGCAAGACACCCGAGGACATCCGAAAAACGT 4879593 Query 1592286 TTAACATCAAG 1592296 ||||||| ||| Sbjct 4879592 TTAACATTAAG 4879582 >seq6839 Length=26866924 Score = 89.7 bits (98), Expect = 6e-12 Identities = 141/200 (71%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 869169 CACTATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGA 869228 ||| |||| | || |||||||| ||||| || ||| |||| || |||||||| | Sbjct 3409725 CACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGTCAGACCGGGCATCA 3409784 Query 869229 GGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGA 869288 | || || ||||| ||||||||||| | | || ||||| || ||||| ||||| | Sbjct 3409785 GACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCCCTCCA 3409844 Query 869289 CGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACT 869348 |||| || || | |||| | |||| ||||| ||| |||| || || ||||| Sbjct 3409845 CGGCAGCGAACGCAATGATTCTCTCGCCAAAG--TTCGCGGCCTTCGATG-AAATCCAAG 3409901 Query 869349 TCATCGCCCAGTCGGCCTTT 869368 | |||||| ||||||||| Sbjct 3409902 AGAGCGCCCAATCGGCCTTT 3409921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106577795503597