Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq6836 152 4e-32 seq6840 86.0 5e-12 >seq6836 Length=4525533 Score = 152 bits (168), Expect = 4e-32 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 34437 ATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGG 34496 ||||| |||||||| ||||||||||| || || |||||||| || || || | || || Sbjct 2257412 ATCGAATTGCGTTTGGGCGCCCAGCTCACAGCCAAAGTACTTGGTTGGATAGGTAGCTGG 2257471 Query 34497 ACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCC 34556 | ||| | ||| | || | |||| ||||||||||| ||| || |||||||||||||| Sbjct 2257472 TCTTCCGATCGCTCTTGCCACCTCGGCCATGTTGACGAGGACCGTTTTGATGCCGTTGCC 2257531 Query 34557 CTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCAC 34616 || ||||| || ||||| || ||| |||||||||||||| ||||| |||| || Sbjct 2257532 TTTACCTTCCACTTTGGCCTGGAGGCGTGGCATTTTGTAGCGATAGAAGATATCCGTAAC 2257591 Query 34617 ATTGCGGTTAACGTTCACAGTCCCCAT 34643 | |||| || ||||| || ||| |||| Sbjct 2257592 ACTGCGATTCACGTTGACGGTCGCCAT 2257618 >seq6840 Length=32352404 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||| || || |||||| | |||||||| ||||||||| | || ||||| Sbjct 311140 AAAATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATTACCTTGGAGGTCGAGCCC 311199 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || || ||| | || || ||||| |||||||| || | || ||| Sbjct 311200 TCTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCACCAGAT 311259 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | | || | || || || ||||||||||||| | || || | || ||| Sbjct 311260 CAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTAC 311319 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| || || || || |||||| ||||| | | ||||| || || Sbjct 311320 AACATTCAGAAGGAGTCCACTTTGCACTTGGTGCTCCGTCTGCGTGGTGG 311369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412807179460613