Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq6837 104 4e-16 seq6839 91.5 2e-12 seq6831 86.0 1e-10 >seq6837 Length=16943266 Score = 104 bits (114), Expect = 4e-16 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCC 2035625 || ||||||||||| ||||| | | ||||| | ||| | | || ||||| | Sbjct 4879773 GAGAAGCGCACCGATGACATCACATCCTGGGATGCAGATTTTCTCAAAGTGGACCAGGGC 4879714 Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685 || || || || ||||| | ||||||||||| | || |||||| | || || | Sbjct 4879713 ACACTATTCGAACTGATCTTAGCCGCCAACTATTTGGATATCAAGGGGTTGCTGGAACTA 4879654 Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745 ||||||||||||||||| | || ||||||||| | |||||||||||||| || || Sbjct 4879653 ACCTGCAAGACCGTGGCCAATATGATTAAGGGCAAGACACCCGAGGACATCCGAAAAACG 4879594 Query 2035746 TTTAACATCAAG 2035757 |||||||| ||| Sbjct 4879593 TTTAACATTAAG 4879582 >seq6839 Length=26866924 Score = 91.5 bits (100), Expect = 2e-12 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200 ||||| | || |||| || ||| ||||||| ||||||| || | || |||||| Sbjct 3410054 AAACAACGAGCTTCGGTTATTTGCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTA 3410113 Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 || ||||| ||| ||||| || |||||||| || || ||||||||| ||||||| Sbjct 3410114 ACAATGCCATCGGAAGCGGCAAAGAAGGCGAGCACATGGGAGATAAAGTGGCGCTCGTTA 3410173 Query 796261 TC-GCTGAGCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCA 796319 || | | | || | |||||| | | ||| ||| || |||||||| | ||||| Sbjct 3410174 TCAGTTAAACGTG-CCCAGTCGGTCAAGTCCTTAGAGAGATCCACCTCCTCCACAGTCCA 3410232 Query 796320 AAAGGAGGCCTCGGCCT 796336 || ||||||||||||| Sbjct 3410233 GAATGAGGCCTCGGCCT 3410249 Score = 86.0 bits (94), Expect = 1e-10 Identities = 176/260 (68%), Gaps = 4/260 (2%) Strand=Plus/Plus Query 793885 TCGATGTGACGCCC--GCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTT 793942 |||||||||||||| | ||| ||| ||||| || |||||| ||||| ||||| Sbjct 3409407 TCGATGTGACGCCCATACGTTG--ATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTT 3409464 Query 793943 GCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTC 794002 ||| || |||||||||| |||||| | | ||| || || ||| |||| || | Sbjct 3409465 GCCATCCAGCGAGATCATCTCCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCC 3409524 Query 794003 GCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGC 794062 ||||| | | | ||| || || || || |||||||| |||||| |||| | || Sbjct 3409525 AACACCGAGTTCCACCAACAGACGATCCGCAACAAATTCAATATACTGGGACATCAATGC 3409584 Query 794063 GGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTC 794122 |||||||| || | |||||||| | || ||| |||||||| ||| || Sbjct 3409585 ACAATTCATGCCAATCAAGTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGT 3409644 Query 794123 GACGGCCTCGATGATGATCT 794142 || || || |||||||| Sbjct 3409645 AACAGCATCCGAGATGATCT 3409664 >seq6831 Length=2564135 Score = 86.0 bits (94), Expect = 1e-10 Identities = 176/262 (67%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 2411714 GCTGGTAATCGCTGCCGCGCACAAATTCGAGACGATCCAGCGGGACGCCAATGTGCTGGA 2411773 ||||||| |||||||| ||||| | || ||||| || || ||||| | | Sbjct 2425639 GCTGGTAGTCGCTGCCCTTTACAAACTTCAGCTTATCCAATGGAACATCAATGGAACGCA 2425698 Query 2411774 GCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGCTCGACGAGGTCCCACGGCG 2411833 ||| |||||||| | |||||| | | || |||||| || ||| |||| Sbjct 2425699 ACATCGCCTTGATCACCTGCTCGTAGTATTTGGTGCGCAGCTCGAGCAGCGGCCATGGCG 2425758 Query 2411834 TCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCCTCACCCGACATCCGG 2411893 ||| ||||| | | |||||||| || ||||| || || ||||| ||| |||| Sbjct 2425759 CCTTCATGTTGTCCAAATAGGCGTGCAGATCAGCAAACAGTATTGTCACCTCACAACCGG 2425818 Query 2411894 CCTGGAGAAAGTCGGCCAGTTTAAAGATGGGCACAAAGTAGCCCAGATGGGGCTTGCCCG 2411953 | | | || || || | || | ||||||||||| ||| | | ||| ||||| |||| Sbjct 2425819 CTTTCAAGAAATCCGCAATCTTGGACATGGGCACAAAATAGGCGACATGTGGCTTTCCCG 2425878 Query 2411954 TCGGCGCGGTGCCCCAATAAAT 2411975 ||| ||| |||||||| || || Sbjct 2425879 TCGTCGCAGTGCCCCAGTAGAT 2425900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915518691628199