Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq6841 228 6e-54 seq5628 98.7 7e-15 seq6838 96.9 3e-14 >seq6841 Length=34148556 Score = 228 bits (252), Expect = 6e-54 Identities = 941/1465 (64%), Gaps = 22/1465 (2%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 || || ||||| |||||||| |||||||| | || || || || ||||| |||||||| Sbjct 15619569 GCGGTGACATTCAGAATACCGTTGGCATCAATGTCGAAGGTCACCTCAATCTGAGGGACA 15619628 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || | | || ||||| || || || | || | |||| |||||| || || Sbjct 15619629 CCGCGTGGTGCGGGTGGAATGCCCGACAGTTCGAACTTGCCCAACAAATTATTGTCCTTG 15619688 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 || | || ||||| ||| | | ||||| || | | || || || || || Sbjct 15619689 GTCATGGCACGCTCACCTTCGTAGACCTGGATCAACACACCGGGCTGGTTGTCCGAGTAG 15619748 Query 281606 GTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 281664 || || || ||||| | | || || || || ||||| | | || | | | Sbjct 15619749 GTGGTGAAGG-TCTGGGTCTGCTTTGTGGGGATGGTGGTGTTGCGCTTGATCAACACGCT 15619807 Query 281665 CATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 281724 ||| | || ||||| || || | ||| || || || || |||||||| | || | | Sbjct 15619808 CATCACGCCGCCAGCGGTCTCGATACCCAGCGACAGGGGGGTGACATCGAGCAGCAACAG 15619867 Query 281725 ATTTTGAAGTTTTT-CATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCAT 281783 || || | || | | | | | | ||||| |||| || || | |||||||||| Sbjct 15619868 ATCCTGCACTTCCTGCGACTTGTCGCCGTGCAAGA-TAGCAGCCTGGACGGCAGCACCAT 15619926 Query 281784 ATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-T 281842 | |||||||| ||||| || || | | | || || | || || ||||| | || | Sbjct 15619927 AGGCAACAGCCTCATCGGGGTTGATGGACTTGTTCAGCTCCTTGCCGTTGAACAGATCCT 15619986 Query 281843 GAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGC 281902 | || | | | ||||| || ||||| | || || || || || ||||| || || Sbjct 15619987 GCAATAGGCGCTGC-ACCTTGGGGATACGGGTGGAGCCACCGACCAACACAATATCGTGA 15620045 Query 281903 ACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCT 281962 | || || |||| ||| | ||| || | || || ||||| || | ||| Sbjct 15620046 ATGGCCGACTTGTCCAATTTAGCATCACGCAATGCCTTCTCCACGGGGTCCATGGT-GCT 15620104 Query 281963 -CTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GAG-TGACATTATA 282018 | |||| || | || || || || ||| | ||||| ||| || || | Sbjct 15620105 GCGGAACAGATCAGCGTTCAGCTCCTCAAAACGAGCGCGAGTAATCGAGGTG----TAGA 15620160 Query 282019 A-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077 | || | || ||||||| ||||| | ||||| | | || || || || || || | Sbjct 15620161 AGTCGGTACCCTCGAACAGCGAATCGATCTCAATGCTCGCCTGGGTAGATGAGGAAAGAG 15620220 Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--T 282135 ||| || ||||| ||||| || || | || | || | || ||| ||| | | Sbjct 15620221 TACGCTTTGCACGCTCACAGGCAGTGCGCAGACGACGCAGAGCAC--GCTTGTTGGTGGT 15620278 Query 282136 CAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATC 282195 || ||| | || | || | |||||| || | ||| | || || |||||||| || Sbjct 15620279 CAGATCCTTCTTGTGCTTGCGCTTGAACTCCTGCACAAAGTGAGTGACTAGACGATTGTC 15620338 Query 282196 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 282255 ||||| ||||| ||||| | || | || | |||| | | || | ||| | || || Sbjct 15620339 GAAATCCTCACCACCCAAATGGGTGTCACCAGCAGTAGATTTGACCTCGAAGATGCCGTC 15620398 Query 282256 TTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 282315 |||| |||| || | |||||| || ||||| |||| ||| ||||| | ||||| Sbjct 15620399 ATCAATCGACAGAATGGAGACATCAAAAGTACCACCGCCCAAATCGAAAATCAACACATT 15620458 Query 282316 CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATT 282375 ||| | || || || || ||||| || | || || |||||||| ||||| Sbjct 15620459 ACGTTCACCAACAGCCTTCTTGTCCAGGCCATAAGCGATGGCCGCGGCAGTTGGCTCATT 15620518 Query 282376 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 282435 |||||| | ||| || || | ||| || || | || ||||| || || || || | || Sbjct 15620519 AATAATACGCAATACGTTCAAACCGGCGATGGTGCCAGCATCCTTGGTTGCCTGACGCTG 15620578 Query 282436 TGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATA 282495 ||||||||| ||||| || || ||||| || ||||||| || || || || | || Sbjct 15620579 TGAATCGTTGAAATAGGCGGGCACAGTGATGACGGCATTGGTAACCGTCTTGCCCAGGTA 15620638 Query 282496 AGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATA 282555 || || || | ||||| || | || | ||| || || || | || || ||| | Sbjct 15620639 CGCCTCGGCGGTCTCCTTCATCTTGGTCAACACCATGGAGGAGATCTCCTCAGG-GAAGA 15620697 Query 282556 TTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAA 282614 | ||| |||| | || | || || | | || || | |||| |||| | Sbjct 15620698 AAGTCTTCTTCTCATCCTTGTACGTAACCTCGATCTTGGGCTTGCCATCAACGTTAACGA 15620757 Query 282615 CTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAA 282674 | | || ||||| | |||||||| || || || |||| || | | ||||| Sbjct 15620758 CCTCGAAAGGCCAGTGCTTCATATCAGACTGGACGGCCGCATCATCGAATTTGCGACCAA 15620817 Query 282675 TTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTG 282734 | | || || ||||| || ||||| | |||||| || | || | || | ||||| | Sbjct 15620818 TCAGACGCTTAGCATCGAAGATAGTTTGGGTTGGGTTCATGGCCACCTGGTTCTTGGCGG 15620877 Query 282735 CATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTAC 282794 | || ||||||| | | || ||||| || || | |||||||||||| || || ||||||| Sbjct 15620878 CGTCACCAATCAAACGCTCCGTCTCCGTGAAGGCAACATATGATGGGGTGGTACGATTAC 15620937 Query 282795 CTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAG 282854 | ||||| || ||||| || ||||| || |||| || | ||||| || ||| | | Sbjct 15620938 CCTGATCGTTGGCAATGATCTCAACCTTGCCATGCTGGAACACACCCACGCAAGAGTAGG 15620997 Query 282855 TTGTTCCTAAATCAATACCAATAGC 282879 |||| || ||||||||||||| ||| Sbjct 15620998 TTGTGCCCAAATCAATACCAACAGC 15621022 Score = 105 bits (116), Expect = 5e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 282722 TGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGA 282781 |||| ||| |||||||| ||||| || | ||||| || |||| | ||||| || || Sbjct 8253933 TGATTTTTAGCTGCATCGCCAATTAGGCGCTCTGTGTCGTTAAAGGCCACATACGAGGGC 8253992 Query 282782 GTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCT 282841 || || ||||| ||||||||||| |||||||| ||||||||| || ||||| ||||| Sbjct 8253993 GTCGTCCGATTGCCTTGATCATTGGCAATAATCTCAACTTTATTGTTCTGCCAAACACCC 8254052 Query 282842 ACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879 || || | || || || | ||| |||||||| || Sbjct 8254053 ACGCAGGAGTAGGTGGTGCCCAGATCGATACCAATTGC 8254090 Score = 100 bits (110), Expect = 2e-15 Identities = 206/304 (68%), Gaps = 7/304 (2%) Strand=Plus/Plus Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 || || ||||| || ||||| || || |||| | |||| |||| || || | ||| Sbjct 8252878 ACCAGCCGATTGTCGAAATCCTCGCCGCCCAGATGCGTATCACCTGCTGTCGCCTTCACT 8252937 Query 282242 TGGAAAAG---TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATA 282298 | ||| || ||| || || | || | | | || ||| ||| || || || | Sbjct 8252938 TCGAACAGCGATCCCTCGTCGATGGAGAGTATGGACACGTCAAAGGTGCCGCCGCCTAAG 8252997 Query 282299 TCAAAAATAAGTACATTCATTTCTTTGTCTT--GGTTTTTATCAAGACCATACGCAAAAG 282356 || || || || ||||| | || | ||| | ||||| || || ||||| || | | Sbjct 8252998 TCGAAGATCAGCACATT--TCGCTCTCCCTTCAGATTTTTGTCCAGGCCATAGGCGAGGG 8253055 Query 282357 CAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCAT 282416 |||| || || || ||||| ||||| | || ||||| | ||| || || || |||| Sbjct 8253056 CAGCCGCCGTCGGCTCATTGATAATGCGCAGCACATTCAAACCGGCTATGGAGCCAGCAT 8253115 Query 282417 CTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTG 282476 ||||||| ||||| | || |||||||| ||||| || || || ||||| || ||||| Sbjct 8253116 CTTTAGTCGCTTGGCGCTGGGAATCGTTGAAATACGCCGGCACCGTAATGACAGCATCCT 8253175 Query 282477 TTAC 282480 |||| Sbjct 8253176 TTAC 8253179 >seq5628 Length=5534 Score = 98.7 bits (108), Expect = 7e-15 Identities = 126/170 (74%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 637122 TATT-GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGAT 637180 |||| || || | |||||||||||| || || ||| |||||||| |||| |||||| | | Sbjct 1919 TATTAGTTGACTTTTCTTCTCCAAACATCGCAAAACAAATGCATGTTGGTCATTTACGTT 1860 Query 637181 CAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGA-CACGATGTTTAT 637239 | || || ||||| || || || |||||| | | ||| | | || | || || ||| | Sbjct 1859 CCACCATAATTGGCGAGTCAATCTGTAGGCTTCTTGAATT-TCTGCAACATGACGTTATT 1801 Query 637240 CGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 637289 || || |||||| | || ||||||||||| || || || ||| | || || Sbjct 1800 CGCATCAATCATCTTGGGGATTGGGGAACGCAGTTTGGCATGCTCATAGC 1751 >seq6838 Length=24764193 Score = 96.9 bits (106), Expect = 3e-14 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334 ||||| ||| || || |||| |||||| || || |||||| ||| || | | | Sbjct 17750535 ACATCGAAGGTGCCGCCGCCCAGATCAAAGATCAGCACATTCCGTTCACTGCCGCCCTGT 17750594 Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || || || || || |||| || || || ||||| ||||| || || | || ||||| Sbjct 17750595 TTGTCCAGGCCGTAGGCAATGGCCGCCGCCGTTGGCTCATTGATGATGCGCAGCACATTG 17750654 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 || || || || || ||||| || ||||| || || || ||||| || || || || Sbjct 17750655 AGTCCGGCTATGACGCCCGCATCCTTGGTGGCCTGCCTCTGCGAATCATTGAAGTAGGCG 17750714 Query 282455 GGAACAGTAATAACGGCATCTGT 282477 || ||||| ||||||||||| || Sbjct 17750715 GGCACAGTGATAACGGCATCGGT 17750737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740294535810066