Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq6838 156 8e-33 seq5292 156 8e-33 seq6840 147 4e-30 seq6836 143 5e-29 >seq6838 Length=24764193 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| ||||| ||||| || || ||||| ||||| || || ||||||| Sbjct 2124948 TACCACCACGCAGACGGAGAACCAAGTGGAGGGTCGATTCCTTCTGAATGTTGTAATCAG 2124889 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| ||||| ||||| || || || ||||| || | || || ||||| | Sbjct 2124888 ACAAGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGGG 2124829 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || |||||||| || || || ||||||||||| || ||| || | Sbjct 2124828 GAATACCTTCCTTGTCCTGAATCTTAGCCTTCACGTTTTCAATCGTGTCGGAAGGCTCCA 2124769 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| ||| || |||||||| |||| ||||| || || || ||||| Sbjct 2124768 CCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTAACGAAGATTTGCAT 2124720 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| || || | || || || ||||| ||||| ||||| || |||| Sbjct 2122668 TACCACCACGCAGACGGAGGACCAGATGAAGGGTCGATTCCTTCTGGATATTGTAGTCAG 2122609 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| ||||| ||||| || || || ||||| || | || |||||||| | Sbjct 2122608 ACAAGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGG 2122549 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||||||||| |||||||| || || ||||| ||||| ||||| || || | Sbjct 2122548 GAATACCTTCCTTATCCTGAATCTTAGCCTTCACATTCTCAATGGTATCTGATGGCTCCA 2122489 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| ||| || |||||||| |||| ||||| || || || ||||| Sbjct 2122488 CCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 2122440 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| ||||| | || || || ||||| ||||| || || || |||| Sbjct 2123124 TACCACCACGCAGACGGAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 2123065 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| ||||| ||||| || || || ||||| || | || || ||||| | Sbjct 2123064 ACAAGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGG 2123005 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||||||||| |||||||| || || || |||||||| ||||| ||| || | Sbjct 2123004 GAATACCTTCCTTATCCTGAATCTTGGCCTTCACGTTTTCAATGGTATCGGAAGGCTCCA 2122945 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| ||| || |||||||| |||| ||||| || || || ||||| Sbjct 2122944 CCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 2122896 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| || || | || || || ||||| ||||| ||||| || |||| Sbjct 2123580 TACCACCACGCAGACGGAGGACCAGATGAAGGGTCGATTCCTTCTGGATATTGTAGTCAG 2123521 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| ||||| ||||| || || || ||||| || | || |||||||| | Sbjct 2123520 ACAAGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGG 2123461 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||||||||| |||||||| || || ||||| ||||| ||||| || || | Sbjct 2123460 GAATACCTTCCTTATCCTGAATCTTAGCCTTCACATTCTCAATGGTATCTGATGGCTCCA 2123401 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| ||| || || ||||| |||| ||||| || || || ||||| Sbjct 2123400 CCTCCAGAGTGATGGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 2123352 >seq5292 Length=4599 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| ||||| ||||| || || ||||| || || ||||| || |||| Sbjct 938 TACCACCACGCAGACGGAGAACCAAGTGGAGGGTCGATTCCTTTTGGATATTGTAGTCAG 879 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||||||||| ||||| || || || ||||| || | || || ||||| | Sbjct 878 ACAAGGTGCGACCGTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGG 819 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || |||||||| || || || ||||||||||| || ||| || | Sbjct 818 GAATACCTTCCTTGTCCTGAATCTTGGCCTTGACGTTTTCAATCGTGTCGGAAGGCTCCA 759 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| ||| || |||||||| |||| ||||| || || || ||||| Sbjct 758 CCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 710 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| ||||| ||||| || || ||||| || || ||||| || |||| Sbjct 1622 TACCACCACGCAGACGGAGAACCAAGTGGAGGGTCGATTCCTTTTGGATATTGTAGTCAG 1563 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||||||||| ||||| || || || ||||| || | || || ||||| | Sbjct 1562 ACAAGGTGCGACCGTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGG 1503 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || |||||||| || || || ||||||||||| || ||| || | Sbjct 1502 GAATACCTTCCTTGTCCTGAATCTTGGCCTTGACGTTTTCAATCGTGTCGGAAGGCTCCA 1443 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| ||| || |||||||| |||| ||||| || || || ||||| Sbjct 1442 CCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 1394 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| || || | || || || || || ||||| ||||| || |||| Sbjct 254 TACCACCACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAGTCAG 195 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | | || ||||| ||||| || || |||||||| || | || |||||||| | Sbjct 194 ACAAAGTGCGGCCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTG 135 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| ||||||||||||||||| || || || || ||||| ||||| ||| || | Sbjct 134 GAATTCCCTCCTTATCTTGAATCTTGGCCTTAACGTTCTCAATGGTATCGGAAGGCTCAA 75 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | |||| ||| || ||||| || ||||| || || || || ||||||||| Sbjct 74 CCTCCAGAGTGATGGTCTTTCCCGTCAAAGTTTTAACGAAGATCTGCATT 25 >seq6840 Length=32352404 Score = 147 bits (162), Expect = 4e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||||| || || ||||| || || || || || || ||| | | ||| Sbjct 15336131 CGGAGCACCAAGTGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGACCA 15336190 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| | ||| || |||||||||||||| | || ||||||||||| |||||||| || Sbjct 15336191 TCTTCCAATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 15336250 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| ||||| ||||| || || ||||| ||||| || || | ||| || Sbjct 15336251 TCCTGGATCTTGGCTTTGACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATG 15336310 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || || | || || ||||| ||||||||| Sbjct 15336311 GTCTTACCCGTTAGGGTTTTAACAAAGATCTGCATT 15336346 >seq6836 Length=4525533 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||||| |||||| || ||||| || || || || | Sbjct 2204628 TACCACCACGTAGACGGAGCACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGG 2204687 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || || || || || || ||||| ||||| || | || |||||||| | Sbjct 2204688 ACAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGG 2204747 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| ||||| ||||| || || ||||||||||| || || || || | Sbjct 2204748 GAATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGTGTCCGAGGGCTCGA 2204807 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || || ||||| ||||| ||||| || || |||||||| Sbjct 2204808 CCTCCAAGGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 2204856 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || | || || || || || ||||| || || || || || Sbjct 2205314 CCACCACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2205373 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || || || || || || ||||| ||||| || | ||||||||||| || Sbjct 2205374 AGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCTGGGGGA 2205433 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| || || ||||| ||||| || || ||||| || Sbjct 2205434 ATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTGTCCGAGGGTTCGACC 2205493 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || || ||||| ||||| ||||| || || |||||||| Sbjct 2205494 TCCAAGGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 2205540 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || | || || || || || ||||| || || || || || Sbjct 2205770 CCACCACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2205829 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || || || || || || ||||| ||||| || | || ||||||||||| Sbjct 2205830 AGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 2205889 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || |||||||| || ||||| || || ||||| ||||| || || || || || Sbjct 2205890 ATACCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCCGAGGGCTCGACC 2205949 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || || ||||| ||||| ||||| || || |||||||| Sbjct 2205950 TCCAAGGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 2205996 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || | || || || || || ||||| || || || || || Sbjct 2205086 CCACCACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2205145 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || || || || || || ||||| ||||| || | || ||||||||||| Sbjct 2205146 AGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 2205205 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || |||||||| || ||||| || || ||||| ||||| || || || || || Sbjct 2205206 ATACCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCCGAGGGCTCGACC 2205265 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || || || || ||||| ||||| || || |||||||| Sbjct 2205266 TCCAAGGTGATGGTTTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 2205312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981741142539099