Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq6840 203 8e-47 >seq6840 Length=32352404 Score = 203 bits (224), Expect = 8e-47 Identities = 568/864 (66%), Gaps = 17/864 (2%) Strand=Plus/Plus Query 110302 ACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCA 110361 |||| ||||| ||||| || ||||| || | ||||| || | ||||| | || Sbjct 31471317 ACTACTTTGGATTCAAGACACTTGAGCGGTCGTATTTGCTAAAAATAAATGGAAAAATAG 31471376 Query 110362 TTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTA 110421 ||| | || || || || | | ||||| || || ||||| ||||| | |||||| Sbjct 31471377 CAGAAAGACCACAGCATTTGCTAATGCGTGTCGCCATAGGTATACATGGCGAAGATATTG 31471436 Query 110422 AAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTA 110481 | ||| ||||| || || | || | | || |||||| | || | Sbjct 31471437 ATTCTGCAGTTGAAACCTACAATTTGCTATCTGAGCGTTTTTTTACTCATGCATCACCAA 31471496 Query 110482 CCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTA 110541 | || ||| |||| || ||| | ||||||| |||| || |||||| || || Sbjct 31471497 CTCTTTTTGCTGCAGCCACAAATCGTCCACAATTGTCTTCATGTTTTCTTTTAACTATAG 31471556 Query 110542 ACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAA 110601 |||||| |||||||| |||| | | | || || || || | || || || Sbjct 31471557 TGTCTGATTCAATTGAAGGGATTTTTAAATCAGTTGAACAATGCGCAATGATATCAAAGT 31471616 Query 110602 ACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCA--AATATC-G 110658 | || |||||||| || | ||||| |||||| | ||||| | ||| | | Sbjct 31471617 CGGCAGGTGGAATTGGACTTAATGTTCACTGTATTCGAGCTAAAGGCACCTCAATTTGTG 31471676 Query 110659 CAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTG 110718 ||| ||| || |||||| |||| | || |||||||||||||| || || | | Sbjct 31471677 GAAC---GAACGGCACTTCAAATGGATTAGTACCAATGTTAAGAGTATTTAATAATGTCG 31471733 Query 110719 CAAAATATGTGAATCAAGG---TGGTAAGAGAAATGGCTCATTTGCTATCTATCTCGAAC 110775 | ||||| |||| || |||||| ||| ||| |||||||||| ||||| || | Sbjct 31471734 CGCGCTATGTTGATCAGGGCGGTGGTAAAAGACCTGGAGCATTTGCTATATATCTGGAGC 31471793 Query 110776 CTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAAC 110835 ||||||| |||||| | || ||||| || || ||| |||||| ||| || |||| Sbjct 31471794 CTTGGCACTCAGATGTCTTCGAATTTTTGGACCTTAAAAAAAATACTGGAAAGGAGGAAC 31471853 Query 110836 AAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTC 110895 | | ||||| ||| | |||| |||| ||||||| | ||| | || |||||||||||| Sbjct 31471854 ATCGTGCACGCGATCTCTTTTTTGCATTGTGGATACCTGATCTTTTTATGAAACGTGTTG 31471913 Query 110896 AAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTAT 110955 ||| |||| ||||| | |||||||| ||| | ||||| || | ||||| | Sbjct 31471914 AAGCTAATGAAGACTGGTCATTGATGTGTCCACATAAATGCCCTGGCCTCCCAGATGTTT 31471973 Query 110956 ATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGG-CAAGTTTCGCAAA 111014 || |||| |||||| |||| || ||||||||| ||| || | || || || Sbjct 31471974 GGGGTGAAGATTTTGAAAACCTCTATATCAAATATGAACGAGAGGGACGAG---CG-AAT 31472029 Query 111015 CAA---ATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGA 111071 | | ||| ||||||| |||||||| ||| | ||||| ||||| || ||||| Sbjct 31472030 CGAGTTATTAAAGCTCAATCTCTTTGGTTTGCCATCATCGAATCTCAAGTAGAGACTGGT 31472089 Query 111072 ACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGA 111131 |||||||| || || | ||| || | ||| | ||| || ||| ||| | ||| Sbjct 31472090 ACTCCTTACATGTTATTTAAGGACTCTTGTAACAGAAAAAGCAACCAACAAAATGTTGGA 31472149 Query 111132 ACAATTAAGTCTAGTAATTTGTGC 111155 || || || | |||||| ||||| Sbjct 31472150 ACTATAAAATGCAGTAATCTGTGC 31472173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186708775487201