Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq6840 114 1e-20 >seq6840 Length=32352404 Score = 114 bits (126), Expect = 1e-20 Identities = 693/1090 (64%), Gaps = 36/1090 (3%) Strand=Plus/Minus Query 136639 ACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTT 136698 || |||||||| || | ||| || || ||||| || | ||||| |||||||| ||||| Sbjct 31473141 ACAGTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTA 31473082 Query 136699 AAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGCC 136758 | |||| | ||| |||||| ||| || |||| || || ||| | || || || Sbjct 31473081 AGACCCGCTTTCCATGAATAAAAATGGATTGATGTTAATTTTCCATAATTGGGTTCAGCT 31473022 Query 136759 ACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTTC 136818 || || ||| | || || || ||||| || | | ||| | || || ||||| || Sbjct 31473021 ACATGAATATTGAAAGACTGACTTTGATCAATAAACGCTCCTCTATCAGCCGCCATTTTT 31472962 Query 136819 AATAGTACTTTTTGCTTAA-TTTCCCAAGCGGTTTTAAAGAGCTCCTTGACATTGGGCGG 136877 | |||| ||| || || ||||||| | |||||| | | || | | || Sbjct 31472961 A-TAGTTGATTTAACTGAAATTTCCCACACAGTTTTATACAAATCACGAATTTCTTTAGG 31472903 Query 136878 AATTTCATCGATATTCTGTACAGATCCG----TTGTT----TTTGATGATTTTCATCATG 136929 ||| || ||||| |||| || || ||| | |||||| |||||||| | Sbjct 31472902 AATAGATTCAATATTTTGTATTGAACCACGACTTGATATTATTTGAT--TTTTCATCTCG 31472845 Query 136930 AGATCAGTCGAGTATACGTTGCTCTCTATGAGTTTATCGACGAGATGCTGATTTACTACT 136989 ||| | | | | ||| | | | | | || | || || || |||||| Sbjct 31472844 TCATCCCACAAATCAA-GTT-----CAGTTAAATCACGGAGTAAGTGGTGGTTCACTACT 31472791 Query 136990 TGATATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTCGAACGAT 137049 ||| | ||||| || | |||| | | ||| | || ||| | ||||||||||| Sbjct 31472790 TGAAACTCGCCAGACAATACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGAC 31472731 Query 137050 TCGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAATGAA 137109 || || || ||||| || || || || | ||||| |||||| |||||| | || ||| Sbjct 31472730 TCATTATTGCCCAATATTTGCGCTGTAGATGCTGTAGGCATGGGAGCGATGAGTAAAGAA 31472671 Query 137110 TTCCGTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTCCAGTTCCACAGAT-TGTT 137168 || | | ||||||| || | || || || | ||||||| ||| |||| ||| Sbjct 31472670 TTTCTGACACCGTGTTGCGCTATAGATTTTTTAAGAGCATTCCAGTCCCAAAGATCTGT- 31472612 Query 137169 CGATTGGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTGCAGGACTTTCTGC 137228 | | | | | ||||||| |||| ||||||||| ||| ||| | ||||| | | Sbjct 31472611 ---TGGTGATTTGTTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTGCCAAC 31472555 Query 137229 ATAAGAATCATATGTTCCGTGCAGTTTCGCCAGTTCAATACTCTGGACTAGTGCGCCATA 137288 |||| ||||||| ||| | | |||| |||| ||| | | || ||||| Sbjct 31472554 GTAAGTCTCATATGGTCCATCTCTCTGAGCCAATTCACAACTGGCTTCCAAAGCTCCATA 31472495 Query 137289 GTAAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTGGCTGTCGTAGGGCAT 137348 ||| ||||||||| | || | ||| ||| ||||| | || ||||| || || Sbjct 31472494 GTATATAGTTTCGAAAATCTGCTGATTTAATAGAAATGCTTCACGACTTTCGTA-GGAAT 31472436 Query 137349 ATC-CAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCGATAGGTCTGTGTT 137407 | | || || || || || |||| ||||| | || ||||| ||||| | ||| Sbjct 31472435 ACCGCATTAATATTAATGCGTCCGCAAACCCTTGGACTCCAATACCAATAGGACGGTGAC 31472376 Query 137408 TAAAATTTGATATTTGAGC-GCTAACAAGCGGATAAAAGTTTGCGTCTATAATTCTATTG 137466 ||||| ||| ||| ||| || ||| || || | ||| || || ||| |||| Sbjct 31472375 GTAAATTAGATTTTTTAGCTTCTGGCAA-AGGGTAGTAATTTATATCAATTATTTTATTT 31472317 Query 137467 AGATTGTTAGTAACGACTCTGGACACTTTGTAGAGCAATTCGAAATCGAAGCTTTTAGAC 137526 | || || ||||||| | | | || | | ||| || || || | ||| | Sbjct 31472316 AAGTTTTTCGTAACGATTTTAGTTACATCTTTAAGCTTTTTAAAGTCATAAGATTTCTCC 31472257 Query 137527 TGTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGCATACGGCCGTTTC-TGT 137585 || || | |||| |||| | || || || || || || || || || |||| | | Sbjct 31472256 TG--CGTCA-CAAACATATTAAGTGCGATTGACGCCAAATTACACACAGCTATTTCATCT 31472200 Query 137586 ATTGTCGCTGTATTGTACAATTTCGGCGCAAAGATTGCTGTTTCGGATCACTCCCAAATT 137645 || || |||| || ||||| | ||| ||||| ||| | || ||| | ||| Sbjct 31472199 GGTGCCG-AATATTCAACTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATT 31472141 Query 137646 CTTTTGATTG-TTTTTCTCGTTGACGTGA-TCTTTATATATCATATACGGAGTTCCGGTT 137703 | ||| ||| ||||||| ||| || || || ||| ||| ||| || ||||| || || Sbjct 31472140 TTGTTGGTTGCTTTTTCT-GTT-ACAAGAGTCCTTAAATAACATGTAAGGAGTACCAGTC 31472083 Query 137704 TCGACTTGAG 137713 || ||||||| Sbjct 31472082 TCTACTTGAG 31472073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445056338865120