Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq6839 131 2e-24 >seq6839 Length=26866924 Score = 131 bits (144), Expect = 2e-24 Identities = 323/482 (67%), Gaps = 6/482 (1%) Strand=Plus/Minus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACT 1455855 ||||||||||||| || ||||| | |||||||| || ||| ||| | | ||| Sbjct 3410249 AGGCCGAGGCCTCATTCTGGACTGTGGAGGAGGTGGATCTCTCTAAGGACTTGACCGACT 3410190 Query 1455856 GGGTGTCGCTGAGC-GACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGC 1455914 ||| || | | | || |||||||||| || ||| || || |||||||| ||| || Sbjct 3410189 GGGCA-CGTTTAACTGATAACGAGCGCCACTTTATCTCCCATGTGCTCGCCTTCTTT-GC 3410132 Query 1455915 CGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATT 1455974 ||| ||||||||| || ||||| || | || ||||| | | ||||| ||| | Sbjct 3410131 CGCTTCCGATGGCATTGTTAATGAGAATCTTGTCGAGCGCTTCAGCCAGGAGGTGCAAAT 3410072 Query 1455975 GCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAAC 1456034 | || || |||| || || || || || |||||||| || || | ||||| || | Sbjct 3410071 AACCGAAGCTCGTTGTTTCTATGGCTTTCAAATCGCCATGGAGAATGTGCACTCGGAGAT 3410012 Query 1456035 CTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCG 1456094 ||| | |||||||| || || | | ||| || || ||| | || || Sbjct 3410011 GTACAGCGTGCTGATCGATACATATATTAGGGATCCACAGGAACGGGATTATCTGTTCAA 3409952 Query 1456095 CGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAA 1456154 ||| | || || |||| | || | | ||||||||| |||||| | ||||| Sbjct 3409951 TGCCGTTGAAACAATGCCCGCTGTCAAGCGAAAGGCCGATTGGGCGCTCTCTTGGATTT- 3409893 Query 1456155 CAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATC 1456213 || || |||| ||| |||||| |||| | || | | || || || || ||||| ||| Sbjct 3409892 CATCGAAGGCCGCGA-ACTTTGGCGAGAGAATCATTGCGTTCGCTGCCGTGGAGGGAATC 3409834 Query 1456214 TTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGT 1456273 || || ||||| || | | ||||||||||| ||||| || || || ||||||||| Sbjct 3409833 TTCTTTAGTGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAACGTGGTCTGATGCCCGGT 3409774 Query 1456274 CT 1456275 || Sbjct 3409773 CT 3409772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177151372976242