Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6840 632 3e-176 seq6839 203 4e-47 >seq6840 Length=32352404 Score = 632 bits (700), Expect = 3e-176 Identities = 1262/1849 (68%), Gaps = 28/1849 (2%) Strand=Plus/Minus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 || |||||||| || ||||| ||||| ||||| || ||||| ||||| || ||| Sbjct 31473117 GCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGACCCGCTTTCCATGAATAAAAA 31473058 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 || || ||||| ||| |||| | || || |||| ||||||||| | || |||||| Sbjct 31473057 TGGATTGATGTTAATTTTCCATAATTGGGTTCAGCTACATGAATATTGAAAGACTGACTT 31472998 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGA--GGAATTT 68572 ||||| || || ||||||||||| ||||||||||||||| | | ||| | | ||||| Sbjct 31472997 TGATCAATAAACGCTCCTCTATCAGCCGCCATTTTTATAGT--TGATTTAACTGAAATTT 31472940 Query 68573 CCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA--GGCTCG-TATTTTGAATGG 68629 |||| | ||| ||| | | | || || | |||| | || ||||||| || | Sbjct 31472939 CCCACACAGTTTTATACAAATCACGAATTTCTTTAGGAATAGATTCAATATTTTGTATTG 31472880 Query 68630 ATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTA 68689 | |||| | ||||| ||| ||| || ||||| |||| |||||| | || |||| Sbjct 31472879 AACCACGACTTGATATTATTTGATTTTTCATCTCGTCATCCCACAAATCAAGTTCAGTTA 31472820 Query 68690 AAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGT 68749 || | | || | || | || |||| |||||| || ||||| || |||| | |||| Sbjct 31472819 AATCACGGAGTAAGTGGTGGTTCACTACTTGAAACTCGCCAGACAATACTCGTCTTGTGT 31472760 Query 68750 AAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATG 68809 |||| || ||||| || || | || |||||||| |||| ||||| || || |||| Sbjct 31472759 AAATGTTTGAAGTATAAGGCTCGAACGACTCATTATTGCCCAATATTTGCGCTGTAGATG 31472700 Query 68810 CAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGT---GTTAT-GATTTTA 68865 | || ||||| || || | | |||| |||||| | ||| ||| | ||| |||||| Sbjct 31472699 CTGTAGGCATGGGAGCGATGAGTAAAGAATTTCTGACACCGTGTTGCGCTATAGATTTT- 31472641 Query 68866 TCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGT 68925 || ||| ||||| ||||||||||| | |||| ||||| | ||| || || Sbjct 31472640 ---TTAAGAGCATTCCAGTCCCAAAGATCTGTTGGTGATTTGTTCCACATATCATACTGC 31472584 Query 68926 AGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCT 68985 | |||||| || ||| | ||| || || ||||| ||||| || | ||| Sbjct 31472583 AAAATTCCTTTGCTTACTGGACTGCCAACGTAAGTCTCATATGGTCCATCTCTCTGAGCC 31472524 Query 68986 AGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGA 69045 | ||||||||| || || || || || || || || ||||||||||||| || ||| | Sbjct 31472523 AATTCACAACTGGCTTCCAAAGCTCCATAGTATATAGTTTCGAAAATCTGCTGATTTAAT 31472464 Query 69046 TCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCC 69105 |||||| |||| ||| | | ||| | | | || ||||| || || || || Sbjct 31472463 AGAAATGCTTCACGACTTTCGTAGGAATACCGCATTAATATTAATGCGTCCGCAAACCCT 31472404 Query 69106 TGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGA 69165 || || |||||||| ||||| | || | ||| || ||| ||||||||| | ||| Sbjct 31472403 TGGACTCCAATACCAATAGGACGGTGACGTAAATTAGATTTTTTAGCTTCTGGCAAAGGG 31472344 Query 69166 TAATAATTAATATCTATAATTTTATT-AAGATTT-CGGACTACTACTTTAACCACGTCCT 69223 || ||||| ||||| || |||||||| ||| ||| || | || | |||| || || | Sbjct 31472343 TAGTAATTTATATCAATTATTTTATTTAAGTTTTTCGTA--ACGATTTTAGTTACATCTT 31472286 Query 69224 TTAGTTTGAGAAAATCA-AATCGTCCATCTA--TAACAAACATATTCAGTGCTACAGATG 69280 | || || ||| ||| || | | || | ||||||||||| ||||| | || | Sbjct 31472285 TAAGCTTTTTAAAGTCATAAGATTTCTCCTGCGTCACAAACATATTAAGTGCGATTGACG 31472226 Query 69281 CTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGAT 69340 | | |||||| || |||| |||| | | ||||| | ||| ||||| || |||| Sbjct 31472225 CCAAATTACACACAGCTATTTCATCTGGTGCCGAATATTCAACTATTTCTGTGCACAGAT 31472166 Query 69341 TACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGT 69400 |||| ||||| ||||| || | |||||| || || || ||| ||||||| | |||||| Sbjct 31472165 TACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACAAGAGTCCTTAA 31472106 Query 69401 AAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCC 69460 | | || | ||||||||||| || | ||||||||||| || | ||||| || Sbjct 31472105 ATAACATGTAAGGAGTACCAGTCTCTACTTGAGATTCGATGATGGCAAACCAAA-GAGAT 31472047 Query 69461 T-AGCATTTATTACGGTCTTGTAACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCG 69519 | ||| || || || || || |||| |||||||| |||| || ||| Sbjct 31472046 TGAGCTTTAATAACTCGATTCGCTCGTCCCTCTCGTTCATATTTGATATAGAGGTTTTCA 31471987 Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579 || || || ||||||||||| | ||||| |||| || |||||||||||||||||| Sbjct 31471986 AAATCTTCACCCCAAACATCTGGGAGGCCAGGGCATTTATGTGGACACATCAATGACCAG 31471927 Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGA 69639 | |||| | | | ||| ||||||||||| ||||| || ||||| | || | ||||||| Sbjct 31471926 TCTTCATTAGCTTCAACACGTTTCATAAAAAGATCAGGTATCCACAATGCAAAAAAGAGA 31471867 Query 69640 TCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATA 69699 || | | | || ||| || ||||| |||||||||||||| || | ||| || | | | Sbjct 31471866 TCGCGTGCACGATGTTCCTCCTTTCCAGTATTTTTTTTAAGGTCCAAAAATTCGAAGACA 31471807 Query 69700 TCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGA 69759 || || ||||| || || |||||||| || | |||| |||| |||| || |||||| Sbjct 31471806 TCTGAGTGCCAAGGCTCCAGATATATAGCAAATGCTCCAGGTCTTTTACCACCGCCCTGA 31471747 Query 69760 TCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGG-AATAATACCATTAGATTT 69818 || | || | || |||||| | ||||| | ||| || | |||| ||||| || | Sbjct 31471746 TCAACATAGCGCGCGACATTATTAAATACTCTTAACATTGGTACTAAT-CCATTTGAAGT 31471688 Query 69819 ACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTAT 69878 || || |||||| |||| | | ||| | || |||||| || | || || || Sbjct 31471687 GCCGTTCGTTCCACAAATTGAGGTGCCTTTAGCTCGAATACAGTGAACATTAAGTCCAAT 31471628 Query 69879 TCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTAT 69938 ||| |||||| || || || | || || ||| | || | | | || || || || Sbjct 31471627 TCCACCTGCCGACTTTGATATCATTGCGCATTGTTCAACTGATTTAAAAATCCCTTCAAT 31471568 Query 69939 GCTATCATCTATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCG 69997 |||| | || ||||| ||||||||| ||||| ||| || | | || | | Sbjct 31471567 TGAATCAGACACTATAGTTAA-AAGAAAACATGAAGACAATTGTGGACGATTTGTGGCTG 31471509 Query 69998 CATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTT 70057 || ||| | || || ||||| ||||| || | ||||| |||| |||||| |||| Sbjct 31471508 CAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACGCTCAGATAGCAAATTGTAGGTTT 31471449 Query 70058 CAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCT 70117 ||| || || || ||||| ||| || ||||| ||||||||||| | || ||||| Sbjct 31471448 CAACTGCAGAATCAATATCTTCGCCATGTATACCTATGGCGACACGCATTAGCAAATGCT 31471389 Query 70118 GAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAA 70177 | |||| |||| | |||| ||||||||| | || || || || || || || | Sbjct 31471388 GTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAAATACGACCGCTCAAGTGTCTTGA 31471329 Query 70178 ACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATT 70226 | ||||| ||||| ||| || || | || || |||||| |||| || Sbjct 31471328 ATCCAAAGTAGTTATATCCGAAATCGCGATCATATATAATAGCAGAGTT 31471280 Score = 93.3 bits (102), Expect = 6e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 70338 AAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGC 70397 ||||| |||||| ||||| || || | ||| || | || ||||| || || |||| ||| Sbjct 31468983 AAATACTTTTTTAGTTTCTTTATGAAGATTGGAAACTGCGATTCTTGCCGCCAGAAGAGC 31468924 Query 70398 ATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTC 70457 |||||| | ||| | || || || | ||||| ||||| || ||||| |||| ||||| Sbjct 31468923 ATAGTCCGCATGAAGGGTTGTTAAACTGGCTGCAATTTCTGCGGCTAAGTTATCCAATTC 31468864 Query 70458 TATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATT 70506 | || | || ||| || || || | ||||||||||| || |||| Sbjct 31468863 TTGTGTAGACACACCGCAGTAGAGTCCATTAATAACTTTCAGGGTTATT 31468815 >seq6839 Length=26866924 Score = 203 bits (224), Expect = 4e-47 Identities = 491/739 (66%), Gaps = 7/739 (1%) Strand=Plus/Plus Query 39317 ACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 39376 || ||||| ||| ||||| ||||| ||||||||| || ||||| ||||| |||| Sbjct 3409415 ACGCCCATACGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGC 3409474 Query 39377 GATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAAT 39436 || || | ||||| || || ||||| | | ||| || |||| || || | | Sbjct 3409475 GAGATCATCTCCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGT 3409534 Query 39437 TCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATT 39496 || | || | ||| ||||||||||| || || ||||| | |||||||||| Sbjct 3409535 TCCACCAACAGACGATCCGCAACAAATTCAATATACTGGGACATCAATGCACAATTCATG 3409594 Query 39497 CCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCT 39556 || || | || || || ||||| || || |||||||||| || ||| || || || Sbjct 3409595 CCAATCAAGTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCC 3409654 Query 39557 GTTAT--TATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTA 39614 | || | || ||| | | |||| || || | |||| ||||| ||||| | Sbjct 3409655 GAGATGATCTCAATGATGC--GCTCACGGCTAGGACGTTGCACCAAATGCCGGAACATCA 3409712 Query 39615 AGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGA 39674 || ||||||||||| | |||||| || | || || || || || || || | Sbjct 3409713 TCACAGCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGTCA 3409772 Query 39675 GTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGA 39734 | || ||||| |||||||| || || |||||||| || | ||||| ||| ||||| Sbjct 3409773 GACCGGGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGA 3409832 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT--ATG 39792 |||| || || || || || || |||| | |||||| || | | | | || ||| Sbjct 3409833 AGATTCCCTCCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCGGCCTTCGATG 3409892 Query 39793 -TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851 ||||| | |||||||| || || ||| ||| ||||||||||| | |||| Sbjct 3409893 AAATCCAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAACGGCAT 3409952 Query 39852 TAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911 | || ||||||| ||| | ||| ||| ||||||||| || | || || |||| Sbjct 3409953 TGAACAGATAATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGTACA 3410012 Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971 | || || || | || || || || || ||||| || || ||||| | ||||| || | Sbjct 3410013 TCTCCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCGGTTA 3410072 Query 39972 TTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGG 40031 |||| ||||| | || | || | | ||| ||||| || || ||||| ||||| Sbjct 3410073 TTTGCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGAAGCGG 3410132 Query 40032 CAAAAAATGCCAATACATG 40050 |||| || || | ||||| Sbjct 3410133 CAAAGAAGGCGAGCACATG 3410151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686850060711240