Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq6836 178 1e-39 seq6841 143 2e-29 >seq6836 Length=4525533 Score = 178 bits (196), Expect = 1e-39 Identities = 353/517 (68%), Gaps = 8/517 (2%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 || || ||||| ||||| || | || || |||||||||| ||| ||||||||| ||| Sbjct 1699261 CCGAAGATTGTGAATGGACCACAGATATTGGATAAATATGTGGGTGAATCGGAAGCGAAT 1699320 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 || ||||| |||| || || || ||||| ||| | || || | || | || ||| Sbjct 1699321 GTGCGACGGCTGTTCGCCGAGGCCGAAGAGGAAGAGAAGCGCCTGGGTCCGAACAGTGGA 1699380 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC--TGG-T 19605 |||| || || || | ||||| | || || || || ||||| | || || ||| | Sbjct 1699381 CTGCATATCATCATCTTCGATGAGATCGATGCCATTTGCAAGCAGCGTGGCTCCGTGGCT 1699440 Query 19606 GTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 | ||| || || || ||||| || |||||||| || ||| | || | || ||||| Sbjct 1699441 GGCAATAGCGGTGTCCACGACACCGTCGTCAATCAGCTGCTGACCAAGATCGATGGTGTG 1699500 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | || |||||||||| || || ||||||||||| ||| ||| ||| | || || Sbjct 1699501 GATCAGTTGAATAATATCTTGGTGATTGGCATGACCAATCGACGGGACATGATCGATGAG 1699560 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 || | | || || ||||| |||||| | | || || || | || ||| | || Sbjct 1699561 GCGCTGCTGCGTCCTGGTCGCTTGGAAGTCCAAATGGAGATCAGTTTGCCCAACGAGGAG 1699620 Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTAAAT 19842 ||||| || | || || |||||||| ||| | ||||||| | ||| | | | Sbjct 1699621 GGACGCGTCCAGATCTTGAACATACACACAAAACGCATGCGAGACTTCAACAAGATCAGT 1699680 Query 19843 GACGATGTAGA-TCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACT 19901 |||||||| || | || || || |||||| ||||| |||| |||||| || ||||| Sbjct 1699681 GACGATGTCGACTGCAG-GGAGATCGCAGCGCTCACCAAGAACTTTAGCGGTGCTGAACT 1699739 Query 19902 TGAGGGATTAGTGAGGGCCGCCCAATCAATTGCAATG 19938 ||||| | ||| |||| || ||||| | |||||| Sbjct 1699740 CGAGGGTCTTGTGCGGGCAGCACAATCGAGCGCAATG 1699776 >seq6841 Length=34148556 Score = 143 bits (158), Expect = 2e-29 Identities = 342/511 (67%), Gaps = 16/511 (3%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| ||||| ||||| || | || || | |||||||| ||| ||||||| | || Sbjct 11458708 CCCAAGATTGTGAATGGACCACAGATTTTGGACAAATATGTGGGTGAATCGGAGGCCAAC 11458767 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 | |||||| ||||||| ||||| ||||| || | || ||| |||| | || ||| Sbjct 11458768 ATTCGACGTCTGTTTGCCGACGCCGAAGAGGAGGAGAAGCGTCTAGGCCCGAACAGTGGA 11458827 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC--TGGT- 19605 ||||||| || || | |||||| | || || ||||||||| | | || || ||| Sbjct 11458828 CTGCACATAATCATCTTTGATGAAATCGATGCCATCTGTAAGGCACGTGGCTCGGTGGCC 11458887 Query 19606 -GTAAA--TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 |||| ||| ||||||||||| || |||||||| || ||| | || | ||||| || Sbjct 11458888 GGTAACAGTGGCGTACATGACACCGTGGTCAATCAGCTGCTGGCTAAGATTGACGGCGTG 11458947 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | || ||||| || || | || ||||||||||| ||| | ||| | || || Sbjct 11458948 GAACAGCTGAACAACATACTGGTCATTGGCATGACCAATCGCAGGGATATGATTGATGAG 11459007 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 || | | || ||||| || |||| | | || ||||||| | | ||| | ||| Sbjct 11459008 GCGCTGCTTCGGCCCGGCCGCCTGGAGGTGCAAATGGAAATTAGCCTGCCCAACGAAGAG 11459067 Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACC--ATGCGACA---AAATAACCTTT 19837 || || || | || | |||||||| ||| || | ||||| | ||||| || Sbjct 11459068 GGGCGCGTTCAGATCCTCAACATACACACA--AAGCGAATGCGCGAGTTCAATAAGATTG 11459125 Query 19838 TAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAG 19897 | |||||| ||| | || |||||||| || || |||| |||||||| | Sbjct 11459126 CCA---GCGATGTGGATAATAAGGAGATTGCAGCATGCACAAAGAACTTCAGCGGCGCTG 11459182 Query 19898 AACTTGAGGGATTAGTGAGGGCCGCCCAATC 19928 | || ||||| | ||| | || || || || Sbjct 11459183 AGCTCGAGGGTCTGGTGCGTGCTGCTCAGTC 11459213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397422862230205