Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq6839 82.4 8e-11 >seq6839 Length=26866924 Score = 82.4 bits (90), Expect = 8e-11 Identities = 340/530 (64%), Gaps = 11/530 (2%) Strand=Plus/Minus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTC 59672 ||||||||| | || |||||| | || ||| | ||| ||| || |||| || | | Sbjct 3410238 TCATTCTGGACTGTGGAGGAGGTGGATCTCTCTAAGGACTTGACCGACTGGG-CACGTTT 3410180 Query 59673 AATT-ACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGG 59731 || | | |||||| || || ||| || || |||||||| || || ||||| Sbjct 3410179 AACTGATAACGAGCGCCACTTTATCTCCCATGTGCTCGCCTTCTTTGCCGCTTCCGATGG 3410120 Query 59732 AATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCG 59791 ||||| | || ||| | | | | ||| | |||| || || || |||| || || Sbjct 3410119 CATTGTTAATGAGAATCTTGTCGAGCGCTTCAGCCAGGAGGTGCAAATAACCGAAGCTCG 3410060 Query 59792 GTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCA 59850 | ||||| | | ||| ||| || ||| | | ||||| |||| |||| | Sbjct 3410059 TTGTTTCTATGGCTTTCAAATCGC-CATGGAGAATGTGCACTCGGAGATGTACAGCGTGC 3410001 Query 59851 TGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGA 59910 ||||||||| | | | |||||| | || || | ||||||| |||| | || | Sbjct 3410000 TGATCGATACATATATTAGGGATCCACAGGAACGGGATTATCTGTTCAATGCCGTTGAAA 3409941 Query 59911 CGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGA---- 59966 | ||||| || || | ||| || || ||||| | ||||| || | || Sbjct 3409940 CAATGCCCGCTGTCAAGCGAAAGGCCGATTGGGCGCTCTCTTGGATT--TCATCGAAGGC 3409883 Query 59967 -GCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGG 60025 || |||| | | |||| || || || |||||| ||||||||||| ||| Sbjct 3409882 CGCGAACTTTGGCGAGAGAATCATTGCGTTCGCTGCCGTGGAGGGAATCTTCTTTAGTGG 3409823 Query 60026 CTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTC 60085 | || | || || ||||| || || ||||| || ||||| || |||| ||||| Sbjct 3409822 CAGCTTTGCCTCGATCTTTTGGCTGAAGAAACGTGGTCTGATGCCCGGTCTGACCTTCTC 3409763 Query 60086 CAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGA 60135 ||| ||| |||| || || ||||||||| | ||| || ||||| |||| Sbjct 3409762 CAATGAGTTGATCTCACGCGACGAGGGCTTGCATTGTGACTTTGCTGTGA 3409713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548477894273040