Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq6838 93.3 3e-14 seq6836 93.3 3e-14 seq5292 93.3 3e-14 >seq6838 Length=24764193 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||||| |||||||| || || ||||||||||||||| || || || Sbjct 2125174 CCGCCACGCAGACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAC 2125115 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| ||||| || |||||||| || | |||||| || || || || Sbjct 2125114 AGGGTGCGACCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGA 2125055 Query 34600 ACTCCCTCCTTGTC 34613 | || |||||||| Sbjct 2125054 ATACCTTCCTTGTC 2125041 >seq6836 Length=4525533 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| || | ||| |||||| || ||||| || || || || || || Sbjct 2204639 AGACGGAGCACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGT 2204698 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || || || || | |||||| || || || || | |||||| Sbjct 2204699 CCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCC 2204758 Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | ||||| | ||| ||||| | ||| || |||| ||| Sbjct 2204759 TTGTCTTGGATC-TTGGCCTTAACATTTTCAATGGTGTCCGAGGGCTCGACCTCCAAGGT 2204817 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || ||||| || || || || || || || ||||||||| Sbjct 2204818 GATGGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCATG 2204857 Score = 84.2 bits (92), Expect = 1e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| ||| || || |||||| || ||||| || || || || || || Sbjct 2204867 AGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGT 2204926 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || || || || | |||||| || || || || | |||||| Sbjct 2204927 CCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCC 2204986 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | ||||| | ||| ||||| | ||| || |||| ||| Sbjct 2204987 TTGTCCTGGATC-TTGGCCTTAACATTCTCAATGGTGTCCGAGGGCTCGACCTCCAAGGT 2205045 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || ||||| || || || || || || || ||||||||| Sbjct 2205046 GATGGTTTTTCCAGTCAAAGTCTTGACGAAGATCTGCATG 2205085 Score = 84.2 bits (92), Expect = 1e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| ||| || || |||||| || ||||| || || || || || || Sbjct 2205323 AGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGT 2205382 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || || || || | ||||||||| || || || | |||||| Sbjct 2205383 CCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCTGGGGGAATACCCTCC 2205442 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | ||||| | ||| ||||| | || || |||| ||| Sbjct 2205443 TTGTCCTGGATC-TTGGCCTTAACATTCTCAATGGTGTCCGAGGGTTCGACCTCCAAGGT 2205501 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || ||||| || || || || || || || ||||||||| Sbjct 2205502 GATGGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCATG 2205541 Score = 84.2 bits (92), Expect = 1e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| ||| || || |||||| || ||||| || || || || || || Sbjct 2205551 AGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGT 2205610 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || || || || | |||||| || || || || | |||||| Sbjct 2205611 CCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCC 2205670 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | ||||| | ||| ||||| | ||| || |||| ||| Sbjct 2205671 TTGTCCTGGATC-TTGGCCTTAACATTCTCAATGGTGTCCGAGGGCTCGACCTCCAAGGT 2205729 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || ||||| || || || || || || || ||||||||| Sbjct 2205730 GATGGTTTTTCCAGTCAAAGTCTTGACGAAGATCTGCATG 2205769 >seq5292 Length=4599 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||||| |||||||| || || ||||||||||||||| || || || Sbjct 1848 CCGCCACGCAGACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAC 1789 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| ||||| || |||||||| || | |||||| || || || || Sbjct 1788 AGGGTGCGACCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGA 1729 Query 34600 ACTCCCTCCTTGTC 34613 | || |||||||| Sbjct 1728 ATACCTTCCTTGTC 1715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314703359517953