Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq6840 109 5e-19 >seq6840 Length=32352404 Score = 109 bits (120), Expect = 5e-19 Identities = 292/443 (66%), Gaps = 14/443 (3%) Strand=Plus/Plus Query 6563 TAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGA 6622 |||| || ||||| |||| |||||| || | || || || ||| ||| ||||| Sbjct 15164165 TAGACGTGAGCATCGCCCAGCGTATGGACAAAATCGCCGGGCTTCAAGCCCGTCACATGG 15164224 Query 6623 GCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATG 6682 ||||||||||| || | || || || || |||||||| ||||| || | |||||| Sbjct 15164225 GCGATCATGTAGGTCAACAAGGCATACGAGGCGATGTTGAAAGGCACTCCCAGACCCATG 15164284 Query 6683 TCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCA------TTCGCGACGTAGAAT 6736 || | || ||||| || |||||||||| || ||| | || || ||||| Sbjct 15164285 TCGGCGCTGCGCTGATACAGTTGGCAGGACAATTCACCACGCGACTGCGAAACATAGAAC 15164344 Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCG 6796 || ||| ||||||||| || | |||||| | || | ||| || ||||| ||| Sbjct 15164345 TGCGCCAGGCAGTGGCACGGCGGCAACGCCATTTGGGGTATGTCCAAAGGATTCCATGCG 15164404 Query 6797 CACATCACGATCCTTCTGTCATCAGGGTTCCGCTTC--AAGGTGTCGATCACGTACTGCA 6854 |||| | ||| | | || | || | || | | | || ||||| || | | || Sbjct 15164405 GACATTATGATGCGACGATCCGCCGGAT--CGTTGCGTATAGTATCGATGACCTGTTTCA 15164462 Query 6855 GCTGGTCCGCTCCCTGTCCCGAATAGTC--CGCTTCGCTCCCCCGATACTCCGCCCCAAA 6912 |||| || ||||| || | ||||| || | | | || ||| | || ||||| Sbjct 15164463 GCTGATCAATACCCTGGCCGGTGTAGTCGTCGGTGCATTTACC--ATATTTTGCGCCAAA 15164520 Query 6913 GTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCC 6972 ||| | ||||||||| || || || || |||| || ||| |||| ||| | | || Sbjct 15164521 GTGACGCCACTGGAAGCCATATACTGGACCCAGATCACCCACCTCGCGATCCGTGTGGCC 15164580 Query 6973 CCGCTTGTCCAGAAAGTCTCGAG 6995 | |||||| ||||| || |||| Sbjct 15164581 ACACTTGTCGAGAAACTCGCGAG 15164603 Score = 109 bits (120), Expect = 5e-19 Identities = 292/443 (66%), Gaps = 14/443 (3%) Strand=Plus/Minus Query 34350 CTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGG 34409 |||| || ||||| |||||| | || | | ||| |||| ||| || |||| || | Sbjct 15164603 CTCGCGAGTTTCTCGACAAGTGTGGCCACACGGATCGCGAGGTGGGTGATCTGGGTCCAG 15164544 Query 34410 TCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCG--GACTA 34467 | || || ||||||||| | |||||||| || | ||| || | | | || ||||| Sbjct 15164543 TATATGGCTTCCAGTGGCGTCACTTTGGCGCAAAATAT--GGTAAATGCACCGACGACTA 15164486 Query 34468 TTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTT--GAAGCGGAACCCT 34525 | || ||||| || |||||| | | || ||||| || | | | || | || Sbjct 15164485 CACCGGCCAGGGTATTGATCAGCTGAAACAGGTCATCGATACTATACGCAACG--ATCCG 15164428 Query 34526 GATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTC 34585 | || | | ||| | |||| ||| ||||| || ||| | || | |||||| | Sbjct 15164427 GCGGATCGTCGCATCATAATGTCCGCATGGAATCCTTTGGACATACCCCAAATGGCGTTG 15164368 Query 34586 CCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAA------TGGGGAGCTGTCCTGC 34639 || ||||||||| ||| || ||||| || || | ||| || |||||||| Sbjct 15164367 CCGCCGTGCCACTGCCTGGCGCAGTTCTATGTTTCGCAGTCGCGTGGTGAATTGTCCTGC 15164308 Query 34640 CAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTAC 34699 || || ||||| || | |||||||| | || ||||| |||||||| || || Sbjct 15164307 CAACTGTATCAGCGCAGCGCCGACATGGGTCTGGGAGTGCCTTTCAACATCGCCTCGTAT 15164248 Query 34700 GCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCAT 34759 || || | || ||||||||||| ||||| ||| ||| || || || | || ||| Sbjct 15164247 GCCTTGTTGACCTACATGATCGCCCATGTGACGGGCTTGAAGCCCGGCGATTTTGTCCAT 15164188 Query 34760 ACGTTGGGGGATGCGCATATCTA 34782 ||| |||| ||||| || |||| Sbjct 15164187 ACGCTGGGCGATGCTCACGTCTA 15164165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448224067961520