Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq6840 91.5 1e-13 >seq6840 Length=32352404 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 ||||||||||| || || |||||||| || || || ||||| | || ||||| | Sbjct 311140 AAAATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATTACCTTGGAGGTCGAGCCC 311199 Query 27847 ACCG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | | || || | ||| ||||| || || |||||||| || | || | Sbjct 311200 TCTGACACCATCGAGAAT--GTCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCACCAG 311257 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || || || || ||||| || || |||| || | ||||| ||||||| | Sbjct 311258 ATCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACT 311317 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||| || || ||| ||||||||| ||||| | ||| ||||||| ||| Sbjct 311318 ACAACATTCAGAAGGAGTCCACTTTGCACTTGGTGCTCCGTCTGCGTGGTGGC 311370 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/233 (69%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || ||||| ||||| || || || || || || |||| |||||| | Sbjct 15336346 AATGCAGATCTTTGTTAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAA----C 15336291 Query 27849 CGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 || || ||| |||| |||||| || || ||||||||||| |||| Sbjct 15336290 CGTCGGA-TACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCA 15336232 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || |||| ||||| || || |||||||| || | |||| | ||||| Sbjct 15336231 GATCAGCAGCGTCTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCCGAC 15336172 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||||||||||| || ||||| ||||| | || | ||||| || Sbjct 15336171 TACAACATCCAAAAAGAGTCAACCTTGCACTTGGTGCTCCGCCTTCGTGGTGG 15336119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355832730083607