Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq6840 706 0.0 seq6839 226 4e-54 >seq6840 Length=32352404 Score = 706 bits (782), Expect = 0.0 Identities = 1275/1847 (69%), Gaps = 24/1847 (1%) Strand=Plus/Minus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 || |||||||| || ||||| ||||| || || || |||||| ||||| || ||| Sbjct 31473117 GCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGACCCGCTTTCCATGAATAAAAA 31473058 Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922 || || ||| | ||| |||| | || || |||| ||||||||| | ||||||||| Sbjct 31473057 TGGATTGATGTTAATTTTCCATAATTGGGTTCAGCTACATGAATATTGAAAGACTGACTT 31472998 Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 76982 ||||| || || ||||||||||||||||||||||||||| | | || | ||||||| Sbjct 31472997 TGATCAATAAACGCTCCTCTATCAGCCGCCATTTTTATAGTTGATTTAACTGAAATTTCC 31472938 Query 76983 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAG-GTTTG--TATTTTGAATGGAA 77039 || | |||||| | | | || || | |||| | || ||||||| || ||| Sbjct 31472937 CACACAGTTTTATACAAATCACGAATTTCTTTAGGAATAGATTCAATATTTTGTATTGAA 31472878 Query 77040 CCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAA 77099 |||| | |||||| ||| ||| || || || |||| |||||| | || |||||| Sbjct 31472877 CCACGACTTGATATTATTTGATTTTTCATCTCGTCATCCCACAAATCAAGTTCAGTTAAA 31472818 Query 77100 ACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAA 77159 | | || | || | || |||| |||||| || ||||||||||||| | |||||| Sbjct 31472817 TCACGGAGTAAGTGGTGGTTCACTACTTGAAACTCGCCAGACAATACTCGTCTTGTGTAA 31472758 Query 77160 ATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCA 77219 || || ||||| || || | || ||||| || ||||| ||||| || ||||| || Sbjct 31472757 ATGTTTGAAGTATAAGGCTCGAACGACTCATTATTGCCCAATATTTGCGCTGTAGATGCT 31472698 Query 77220 GTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTT-ATCTTT 77278 || ||||| || || | | |||| |||||||| ||| ||||| | | | || ||| Sbjct 31472697 GTAGGCATGGGAGCGATGAGTAAAGAATTTCTGACACC--GTGTTGCGCTATAGATTTTT 31472640 Query 77279 TA-GATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAA 77337 || || ||||| ||||||||||||| ||| | ||| | ||| || || | || Sbjct 31472639 TAAGAGCATTCCAGTCCCAAAGATCTGTTGGTGATTTGTTCCACATATCATACTGCAAAA 31472580 Query 77338 TTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTT 77397 |||| || || | ||| || || ||||| ||||| ||| | | ||| | || Sbjct 31472579 TTCCTTTGCTTACTGGACTGCCAACGTAAGTCTCATATGGTCCATCTCTCTGAGCCAATT 31472520 Query 77398 CACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTT 77457 ||||||| |||||||| ||||| || || || ||||||||||||| || ||| | Sbjct 31472519 CACAACTGGCTTCCAAAGCTCCATAGTATATAGTTTCGAAAATCTGCTGATTTAATAGAA 31472460 Query 77458 GTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAA 77517 ||||||| ||| || | | ||| | | | || || || || || || || || | Sbjct 31472459 ATGCTTCACGACTTTCGTAGGAATACCGCATTAATATTAATGCGTCCGCAAACCCTTGGA 31472400 Query 77518 CTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAAT 77577 |||||||||||||||| | || | ||| || ||||||||||||| | ||| || | Sbjct 31472399 CTCCAATACCAATAGGACGGTGACGTAAATTAGATTTTTTAGCTTCTGGCAAAGGGTAGT 31472340 Query 77578 AATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTT 77637 |||| || || || |||||||| | ||| | ||| | |||| || || || || | Sbjct 31472339 AATTTATATCAATTATTTTATTTAAGTTTTTCGTAACGATTTTAGTTACATCTTTAAGCT 31472280 Query 77638 TAAGAAAATCA-AATCTTCCATCTA--TAACAAACATGTTCAAAGCTATAGATGCTAGAT 77694 | ||| ||| || || | || | |||||||| || | || || || || | || Sbjct 31472279 TTTTAAAGTCATAAGATTTCTCCTGCGTCACAAACATATTAAGTGCGATTGACGCCAAAT 31472220 Query 77695 TACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTAC 77754 |||| || |||| |||| | | ||||| | ||| || || || |||||||| | Sbjct 31472219 TACACACAGCTATTTCATCTGGTGCCGAATATTCAACTATTTCTGTGCACAGATTACTGC 31472160 Query 77755 ATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAA 77814 |||| ||||| || | ||||||||||||||| ||| | || || ||||||||| | | | Sbjct 31472159 ATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACAAGAGTCCTTAAATAACA 31472100 Query 77815 TAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTT 77874 | | ||||| || || || | || |||||||| || | ||| | | ||||| Sbjct 31472099 TGTAAGGAGTACCAGTCTCTACTTGAGATTCGATGATGGCAAACCAAAGAGATTGAGCTT 31472040 Query 77875 TTATCA-TAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCA 77933 | || | | |||| | ||| | ||||| |||||||| |||| || |||||| || Sbjct 31472039 TAATAACTCGATTCGC-TCGTCCCTCTCGTTCATATTTGATATAGAGGTTTTCAAAATCT 31471981 Query 77934 TCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCA 77993 || ||||||||||| | |||||||||| || ||| ||||||||||||||||| || Sbjct 31471980 TCACCCCAAACATCTGGGAGGCCAGGGCATTTATGTGGACACATCAATGACCAGTCTTCA 31471921 Query 77994 TCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGG 78053 | | | ||| ||||||||||| |||||||||||||| | |||| ||| ||||| || Sbjct 31471920 TTAGCTTCAACACGTTTCATAAAAAGATCAGGTATCCACAATGCAAAAAAGAGATCGCGT 31471861 Query 78054 GTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAA 78113 | | |||||| || ||||| ||||| |||||||| || | ||| || | | ||| || Sbjct 31471860 GCACGATGTTCCTCCTTTCCAGTATTTTTTTTAAGGTCCAAAAATTCGAAGACATCTGAG 31471801 Query 78114 TGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATA 78173 ||||| || || |||||||| || | ||||||||| |||| ||| |||||||| | | Sbjct 31471800 TGCCAAGGCTCCAGATATATAGCAAATGCTCCAGGTCTTTTACCACCGCCCTGATCAACA 31471741 Query 78174 TATCTGGCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCGTTAGATGTTCCATT 78232 || | ||| |||||| | ||||| |||||||| | |||| || || || || || || Sbjct 31471740 TAGCGCGCGACATTATTAAATACTCTTAACATTGGTACTAAT-CCATTTGAAGTGCCGTT 31471682 Query 78233 TGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATAT----CCCTATTC 78288 |||||| |||| | | || | || |||||| | || | || || |||| Sbjct 31471681 CGTTCCACAAATTGAGGTGCCTTTAGCTCGAATA----CAGTGAACATTAAGTCCAATTC 31471626 Query 78289 CTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATAC 78348 | |||||| ||| ||||| | ||||| ||| | || | | || || || || Sbjct 31471625 CACCTGCCGACTTTGATATCATTGCGCATTGTTCAACTGATTTAAAAATCCCTTCAATTG 31471566 Query 78349 TGTCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCA 78407 ||| || || ||||| ||||||||| ||||| ||| || || || ||||| Sbjct 31471565 AATCAGACACTATAGTTAA-AAGAAAACATGAAGACAATTGTGGACGATTTGTGGCTGCA 31471507 Query 78408 TTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCA 78467 ||| | || || |||||||| ||||| | ||||| || | |||||| |||||| Sbjct 31471506 GCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACGCTCAGATAGCAAATTGTAGGTTTCA 31471447 Query 78468 ATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGA 78527 | || || || || || ||| || |||| || |||||||| | || |||||| Sbjct 31471446 ACTGCAGAATCAATATCTTCGCCATGTATACCTATGGCGACACGCATTAGCAAATGCTGT 31471387 Query 78528 GGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAA 78587 |||||||| | | || ||||||||| | ||| || || || | || || || Sbjct 31471386 GGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAAATACGACCGCTCAAGTGTCTTGAAT 31471327 Query 78588 CCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATT 78634 ||||| ||||| ||| || || | || || |||||| |||| || Sbjct 31471326 CCAAAGTAGTTATATCCGAAATCGCGATCATATATAATAGCAGAGTT 31471280 Score = 102 bits (112), Expect = 1e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 78746 AAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGC 78805 ||||| |||||| ||||| || || ||||| || || || |||||||| || |||| ||| Sbjct 31468983 AAATACTTTTTTAGTTTCTTTATGAAGATTGGAAACTGCGATTCTTGCCGCCAGAAGAGC 31468924 Query 78806 ATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTC 78865 ||| || | ||| | || || || ||||||| |||||||| ||||| |||| || || Sbjct 31468923 ATAGTCCGCATGAAGGGTTGTTAAACTGGCTGCAATTTCTGCGGCTAAGTTATCCAATTC 31468864 Query 78866 TATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGG 78909 | || | || || || ||||| | ||||||||||| || Sbjct 31468863 TTGTGTAGACACACCGCAGTAGAGTCCATTAATAACTTTCAGGG 31468820 >seq6839 Length=26866924 Score = 226 bits (250), Expect = 4e-54 Identities = 502/744 (67%), Gaps = 17/744 (2%) Strand=Plus/Plus Query 47841 ACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 47900 || ||||| ||||||||| || || ||||||||| || ||||| ||||| |||| Sbjct 3409415 ACGCCCATACGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGC 3409474 Query 47901 GATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAAT 47960 || || | |||||||| |||||||| | ||| || ||||| || || | | Sbjct 3409475 GAGATCATCTCCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGT 3409534 Query 47961 TCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATT 48020 || | ||| | ||| ||||| ||||| ||||| ||||| | |||||||||| Sbjct 3409535 TCCACCAACAGACGATCCGCAACAAATTCAATATACTGGGACATCAATGCACAATTCATG 3409594 Query 48021 CCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCC 48080 || || | || || || ||||| || || ||||||||||| || || || ||||||||| Sbjct 3409595 CCAATCAAGTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCC 3409654 Query 48081 ACTATTATCGATGTTACCGTTTC-CTCAC---TTGGTGGATACAACAAATGTTTAAACAT 48136 || ||| | | | | | ||||| | || | | || |||||| ||||| Sbjct 3409655 GAGATGATC----TCAATGATGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACAT 3409710 Query 48137 TAA-ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATG 48195 | ||| ||||| |||||||| | || || || | || || || || || || | Sbjct 3409711 CATCACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGG 3409769 Query 48196 TGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAA 48254 | ||||||||||| || |||||||| || |||||||| || | || |||| | ||| | Sbjct 3409770 TCAGACCGGGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGC-AAAGCTGCCACTA 3409828 Query 48255 AAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGC----TTC 48310 ||||| || || || ||||| || || || | | |||||| || | | || ||| Sbjct 3409829 AAGAAGATTCCCTCCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCGGCCTTC 3409888 Query 48311 GTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTAT 48370 | || ||||| | |||||||| ||||| ||| ||| ||||||||||| | Sbjct 3409889 GATGAA-ATCCAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAAC 3409947 Query 48371 AGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACT 48430 ||||| || ||| | | ||| | ||| ||| || ||||| || | | || Sbjct 3409948 GGCATTGAACAGATAATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCT 3410007 Query 48431 ATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTC 48490 ||||| || ||||| | ||| || || || || ||||| || || ||||| | ||||| Sbjct 3410008 GTACATCTCCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTC 3410067 Query 48491 TGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACT 48550 || || || |||||| | || || || | | ||||||||| || || ||||| Sbjct 3410068 GGTTATTTGCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGA 3410127 Query 48551 AGCAGCAAAAAATGCTAATACATG 48574 ||| ||||| || || | ||||| Sbjct 3410128 AGCGGCAAAGAAGGCGAGCACATG 3410151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694609397134240