Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq6840 679 0.0 seq6839 248 1e-60 >seq6840 Length=32352404 Score = 679 bits (752), Expect = 0.0 Identities = 1271/1848 (69%), Gaps = 26/1848 (1%) Strand=Plus/Minus Query 75398 GCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 75457 ||||||||||| || ||||| ||||| || || || |||||| ||||| || ||| Sbjct 31473117 GCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGACCCGCTTTCCATGAATAAAAA 31473058 Query 75458 TGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTT 75517 || || ||||| ||| |||| | || || |||| ||||||||| | ||||||||| Sbjct 31473057 TGGATTGATGTTAATTTTCCATAATTGGGTTCAGCTACATGAATATTGAAAGACTGACTT 31472998 Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 75577 ||||| || || ||||||||||||||||||||||||||| | | || | ||||||| Sbjct 31472997 TGATCAATAAACGCTCCTCTATCAGCCGCCATTTTTATAGTTGATTTAACTGAAATTTCC 31472938 Query 75578 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA--GATTTG-TATTTTGAATGGAT 75634 || | |||||| | | | || || | |||| |||| ||||||| || || Sbjct 31472937 CACACAGTTTTATACAAATCACGAATTTCTTTAGGAATAGATTCAATATTTTGTATTGAA 31472878 Query 75635 CCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAA 75694 || | | ||||| ||| ||| || ||||| |||| |||||| | || |||||| Sbjct 31472877 CCACGACTTGATATTATTTGATTTTTCATCTCGTCATCCCACAAATCAAGTTCAGTTAAA 31472818 Query 75695 ACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAA 75754 | | || | || | || || | |||||| || ||||||||||||| || |||||| Sbjct 31472817 TCACGGAGTAAGTGGTGGTTCACTACTTGAAACTCGCCAGACAATACTCGTCTTGTGTAA 31472758 Query 75755 ATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCA 75814 || || ||||| || || | || ||||| || ||||| ||||| || || || || Sbjct 31472757 ATGTTTGAAGTATAAGGCTCGAACGACTCATTATTGCCCAATATTTGCGCTGTAGATGCT 31472698 Query 75815 GTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTT-ATCTTT 75873 || ||||| || || | | |||| |||||||| ||| ||||| | | | || ||| Sbjct 31472697 GTAGGCATGGGAGCGATGAGTAAAGAATTTCTGACACC--GTGTTGCGCTATAGATTTTT 31472640 Query 75874 TA-GATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAA 75932 || || ||||| ||||||||||||| |||| | ||| | ||| || || | || Sbjct 31472639 TAAGAGCATTCCAGTCCCAAAGATCTGTTGGTGATTTGTTCCACATATCATACTGCAAAA 31472580 Query 75933 TTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTT 75992 |||| ||||| | ||| || || || || | || || | | ||| | || Sbjct 31472579 TTCCTTTGCTTACTGGACTGCCAACGTAAGTCTCATATGGTCCATCTCTCTGAGCCAATT 31472520 Query 75993 CGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAA---GAT 76049 | ||||| || || || || || || || || ||||||||||||| || ||| | || Sbjct 31472519 CACAACTGGCTTCCAAAGCTCCATAGTATATAGTTTCGAAAATCTGCTGATTTAATAGAA 31472460 Query 76050 CTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCT 76109 | |||||| |||| || | | ||| | | | || ||||| || || | || | Sbjct 31472459 AT---GCTTCACGACTTTCGTAGGAATACCGCATTAATATTAATGCGTCCGCAAACCCTT 31472403 Query 76110 GAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGT 76169 | ||||||||||||||||| | || | ||| || ||| ||||||||| | ||||| Sbjct 31472402 GGACTCCAATACCAATAGGACGGTGACGTAAATTAGATTTTTTAGCTTCTGGCAAAGGGT 31472343 Query 76170 AATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTA 76229 | ||||| ||||| || |||||||| | ||| | ||| | |||| || || || | Sbjct 31472342 AGTAATTTATATCAATTATTTTATTTAAGTTTTTCGTAACGATTTTAGTTACATCTTTAA 31472283 Query 76230 GTTTGAGAAAATCAAAT--TTTC-CATCTATCACAAACATATTAAGAGCTATAGATGCTA 76286 | || ||| ||| | |||| | | |||||||||||||||| || || || || | Sbjct 31472282 GCTTTTTAAAGTCATAAGATTTCTCCTGCGTCACAAACATATTAAGTGCGATTGACGCCA 31472223 Query 76287 GATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTAC 76346 |||||| || |||| |||| | | ||||| | ||| || ||||| ||||||| Sbjct 31472222 AATTACACACAGCTATTTCATCTGGTGCCGAATATTCAACTATTTCTGTGCACAGATTAC 31472163 Query 76347 TACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAA 76406 | || || |||||||||| ||||||||||||||| ||| ||||||| ||||||||| || Sbjct 31472162 TGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACAAGAGTCCTTA--AA 31472105 Query 76407 GAACAA--ACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCT 76464 |||| | ||||| ||||| || | || |||||||| || | ||| | | Sbjct 31472104 TAACATGTAAGGAGTACCAGTCTCTACTTGAGATTCGATGATGGCAAACCAAAGAGATTG 31472045 Query 76465 AGCTTTTATTA-TAGATTTGTATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAA 76523 |||||| || | | |||| | ||| ||||| |||||||| |||| | ||||| Sbjct 31472044 AGCTTTAATAACTCGATTCGC-TCGTCCCTCTCGTTCATATTTGATATAGAGGTTTTCAA 31471986 Query 76524 ATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACT 76583 | || || ||||||||||| | ||||| |||| || ||||||||||||||||| | Sbjct 31471985 AATCTTCACCCCAAACATCTGGGAGGCCAGGGCATTTATGTGGACACATCAATGACCAGT 31471926 Query 76584 CACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGAT 76643 | ||| | | ||| ||||||||||| |||||||||||||| | |||| ||| |||| Sbjct 31471925 CTTCATTAGCTTCAACACGTTTCATAAAAAGATCAGGTATCCACAATGCAAAAAAGAGAT 31471866 Query 76644 CTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATAT 76703 | || | | | |||| || ||||| ||||| |||||||| || | || || | | || Sbjct 31471865 CGCGTGCACGATGTTCCTCCTTTCCAGTATTTTTTTTAAGGTCCAAAAATTCGAAGACAT 31471806 Query 76704 CAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGAT 76763 | || ||||| || || |||||||| || | | || |||| |||| ||| ||||||| Sbjct 31471805 CTGAGTGCCAAGGCTCCAGATATATAGCAAATGCTCCAGGTCTTTTACCACCGCCCTGAT 31471746 Query 76764 CTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGG-AATAATGCCGTTAGATGTA 76822 | | ||| | || |||||| | ||||| |||||||| | |||| || || || || Sbjct 31471745 CAACATAGCGCGCGACATTATTAAATACTCTTAACATTGGTACTAAT-CCATTTGAAGTG 31471687 Query 76823 CCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATT 76882 || || |||||| |||| | | || || |||||| || | || || ||| Sbjct 31471686 CCGTTCGTTCCACAAATTGAGGTGCCTTTAGCTCGAATACAGTGAACATTAAGTCCAATT 31471627 Query 76883 CCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATA 76942 || |||||| || || || | || || ||| | || | | | || || || || Sbjct 31471626 CCACCTGCCGACTTTGATATCATTGCGCATTGTTCAACTGATTTAAAAATCCCTTCAATT 31471567 Query 76943 CTATCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGC 77001 |||| || || ||||| ||||||||| ||||| ||| || || || |||| Sbjct 31471566 GAATCAGACACTATAGTTAA-AAGAAAACATGAAGACAATTGTGGACGATTTGTGGCTGC 31471508 Query 77002 ATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTC 77061 | ||| | || || ||||||||||| || | ||||| || | |||||| ||||| Sbjct 31471507 AGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACGCTCAGATAGCAAATTGTAGGTTTC 31471448 Query 77062 AATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTG 77121 || | | || ||||| ||| || |||| ||||||||||| | || |||||| Sbjct 31471447 AACTGCAGAATCAATATCTTCGCCATGTATACCTATGGCGACACGCATTAGCAAATGCTG 31471388 Query 77122 AGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAA 77181 |||| |||| | | || ||||||||| | ||| || || || | || || || Sbjct 31471387 TGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAAATACGACCGCTCAAGTGTCTTGAA 31471328 Query 77182 ACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATT 77229 ||||| ||||| ||| || || | || || |||||| | || || Sbjct 31471327 TCCAAAGTAGTTATATCCGAAATCGCGATCATATATAATAGCAGAGTT 31471280 Score = 107 bits (118), Expect = 3e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 77341 AAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGC 77400 ||||| |||||| ||||| || || ||||| || || || ||||| || || |||| || Sbjct 31468983 AAATACTTTTTTAGTTTCTTTATGAAGATTGGAAACTGCGATTCTTGCCGCCAGAAGAGC 31468924 Query 77401 ATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTC 77460 |||||| | ||| | || || | ||||||| |||||||| ||||| |||| ||||| Sbjct 31468923 ATAGTCCGCATGAAGGGTTGTTAAACTGGCTGCAATTTCTGCGGCTAAGTTATCCAATTC 31468864 Query 77461 TATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATT 77509 | |||| || ||| || || || | ||||||||||| || |||| Sbjct 31468863 TTGTGTAGACACACCGCAGTAGAGTCCATTAATAACTTTCAGGGTTATT 31468815 >seq6839 Length=26866924 Score = 248 bits (274), Expect = 1e-60 Identities = 509/744 (68%), Gaps = 17/744 (2%) Strand=Plus/Plus Query 46330 ACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 46389 || ||||| ||| ||||| || || ||||||||| || ||||| ||||| |||| Sbjct 3409415 ACGCCCATACGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGC 3409474 Query 46390 GATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAAT 46449 || || | |||||||| || ||||| | ||| || ||||| || || | | Sbjct 3409475 GAGATCATCTCCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGT 3409534 Query 46450 TCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATT 46509 || | ||| | ||| ||||| ||||| |||||| ||||| | |||||||||| Sbjct 3409535 TCCACCAACAGACGATCCGCAACAAATTCAATATACTGGGACATCAATGCACAATTCATG 3409594 Query 46510 CCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCC 46569 || || | ||||| || ||||| || || ||||||||||| ||||| || ||||||||| Sbjct 3409595 CCAATCAAGTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCC 3409654 Query 46570 GATATTATCGATGTTACTGTTTC-CTCA---CTTGGTGGATGCATCAAATGTTTAAACAT 46625 || || ||| | | || | | |||| || || | |||| |||||| ||||| Sbjct 3409655 GAGAT----GATCTCAATGATGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACAT 3409710 Query 46626 TA-AACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATG 46684 | ||| ||||| |||||||| | ||| || || | || || || || || || | Sbjct 3409711 CATCACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGG 3409769 Query 46685 TGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAA 46743 | || || ||||| || ||||| || || |||||||| || | || |||| | ||| | Sbjct 3409770 TCAGACCGGGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGC-AAAGCTGCCACTA 3409828 Query 46744 AAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATT- 46802 ||||| || || || || || ||||| || | | |||||| || | | || | || Sbjct 3409829 AAGAAGATTCCCTCCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCGGCCTTC 3409888 Query 46803 -ATG-AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATA 46860 ||| |||||| | |||||||| |||||| ||| ||| ||||||||||| | Sbjct 3409889 GATGAAATCCAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAACG 3409948 Query 46861 GCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTA 46920 ||||| || ||| | | ||| | ||| ||| ||||||||| || | | || Sbjct 3409949 GCATTGAACAGATAATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTG 3410008 Query 46921 TACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 46980 ||||| || || || | || || || || || ||||| || || ||||| | ||||| Sbjct 3410009 TACATCTCCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCG 3410068 Query 46981 GTAATCTGTACCTCTGTACAAAATCGTTCAGACAA-ATTCTCATTCACTATTCCATCACT 47039 || || || ||||| | || || || ||||| ||||||||| || || ||||| Sbjct 3410069 GTTATTTGCACCTCCTGGCTGAAGCGCTC-GACAAGATTCTCATTAACAATGCCATCGGA 3410127 Query 47040 AGCAGCAAAAAATGCCAATACATG 47063 ||| ||||| || || | ||||| Sbjct 3410128 AGCGGCAAAGAAGGCGAGCACATG 3410151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712873435197120