Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq6838 89.7 4e-13 >seq6838 Length=24764193 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| || || || || |||| ||||||||||| ||| |||| ||| || | Sbjct 2122668 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACCATCACCTTGGAGGTGGAGCCATCC 2122727 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || || || ||| ||||| ||||| ||||| || ||| Sbjct 2122728 GATACCATTGAGAATGTGAAGGCTAAGATTCAGGACAAGGAAGGTATTCCCCCAGACCAA 2122787 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | ||||| | || ||||| ||| |||||||| | || || | || || ||| Sbjct 2122788 CAGCGTCTTATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACCTTGTCTGACTACAAT 2122847 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || ||||| || || ||| | || | |||||||| ||||| Sbjct 2122848 ATCCAGAAGGAATCGACCCTTCATCTGGTCCTCCGTCTGCGTGGTGG 2122894 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| || || || || |||| ||||||||||| ||| |||| ||| || | Sbjct 2123124 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACCATCACCTTGGAGGTGGAGCCATCC 2123183 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || || |||||| ||||| ||||| ||||| || || Sbjct 2123184 GATACCATTGAGAATGTGAAGGCTAAAATTCAGGACAAGGAAGGTATTCCCCCAGACCAG 2123243 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | || || | || ||||| ||| |||||||| | || || | ||||| || Sbjct 2123244 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACCTTGTCTGATTACAAC 2123303 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || ||||| || || ||| | || | |||||||| ||||| Sbjct 2123304 ATTCAGAAGGAATCGACCCTTCATCTGGTCCTCCGTCTGCGTGGTGG 2123350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421776031623016