Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2872 118 1e-21 SEQ17778 105 7e-18 >seq2872 Length=9359 Score = 118 bits (130), Expect = 1e-21 Identities = 514/802 (64%), Gaps = 22/802 (3%) Strand=Plus/Plus Query 16694 TTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTA 16753 || ||||| ||||| |||||||| || | ||| || |||||||||| || ||||| Sbjct 3008 TTCTCGAAGAAGTTGGTTTTGCCATCCAAAGAGATCATCTCCATGAACGAGAATGGATTC 3067 Query 16754 GTAGC--TGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATT 16811 | | || |||| || | | || || || | | || | ||| || ||||| | Sbjct 3068 TTTGTGTTGTAAATCTTGCCCACT--CCAAGCTCAACCAATAGGCGATCAGCGACAAACT 3125 Query 16812 CTATATATTGGCACATTAATTCGCAGTTCATTCCTAT-AAGACGTACCGGAAGAGCTTCC 16870 | ||||||| | |||| | | |||||||| || || ||| | || || || || || Sbjct 3126 CGATATATTCGGACATCAGAGCACAGTTCATGCCAATCAAGTTG-ACGGGCAGCGCATCG 3184 Query 16871 GTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTTCC--- 16927 || | || ||||| ||| || || ||| | || || | | |||||| Sbjct 3185 GTGAGGAACTCCTGCTCAATAGTCACAGCATCCGTTATGATTTCAATGATGCGTTCCCGA 3244 Query 16928 -TCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCC 16986 | || || || | | ||||| ||||| || || || || ||||| | || Sbjct 3245 CTAGGCCGCTGCACC----AAATGTTGGAACATAAGCACCGCAAAGTCACAATGCAGACC 3300 Query 16987 CTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTT 17046 || || | ||| | |||||| || ||||| | || ||||| ||| || ||||| Sbjct 3301 TTCATCGCGAGAGATCAATTCGTTGGAGAATGTAAGTCCAGGCATAAGTCCACGCTTCTT 3360 Query 17047 TAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGC 17106 | ||| || || | || || |||| ||||| || || || || | ||||| || Sbjct 3361 CAGCCAGAAGATGGATGCAAAGCTCCCACTGAAGAAGATGCCTTCAACAGCAGCAAAAGC 3420 Query 17107 GATTAATCGTTCGGCGTACGTCGC-GTCTTTGTTACGA-ATCCATTTCTGCACCCACTCG 17164 || | ||||| | | | || | ||| | | || ||||| | |||| || Sbjct 3421 AATAATACGTTCACCAAAGTTGGCAGCCTTCG--AAGAGATCCAAGAAAGAGCCCAGTCT 3478 Query 17165 GCTTTTTGCTTTATGCAATC--CATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCT 17222 || || |||| | || | ||||||||| ||||| || || | | ||| | | Sbjct 3479 GCCTTCCGCTTAA--CAGCCGGCATCGTTTCAATGGCATTGAAGAGATAGTCTCGCTGAT 3536 Query 17223 GTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCA 17282 | | || | ||||| || || ||||| | |||||||||||||| || | ||||||| Sbjct 3537 GAGGATCCCTGATATAGGTGTCAATGAGCACACTGTACATTTCGGAATGCACATTCTCCA 3596 Query 17283 TGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATC 17342 |||| ||||| || || |||||||| || || || | | || ||||| | || | Sbjct 3597 TGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCGGTCACCTGCACTTCTTGGCTAAAAC 3656 Query 17343 GTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCT 17402 |||| | ||||||||||| || || || || || || || || ||||| | |||| Sbjct 3657 GTTCGACCAGATTTTCGTTAACAATTCCATCAGAAGCAGCAAAGAAGGCCAACACATGCG 3716 Query 17403 TAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATAT 17462 ||||||| || | ||||| | ||| || | | || ||||| | || Sbjct 3717 ATATGAAATGACGCTCATTATCCGTAAGCTTGGCCCAATCAGTCATGTCCTTGGACAGAT 3776 Query 17463 CCACTTCTTCGGGGGTCCAAAA 17484 ||||||||||| |||||| || Sbjct 3777 CCACTTCTTCGACGGTCCAGAA 3798 >SEQ17778 Length=11298 Score = 105 bits (116), Expect = 7e-18 Identities = 184/261 (70%), Gaps = 5/261 (2%) Strand=Plus/Minus Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTGTCGTGGAGCCCC 119842 |||||||| || ||||| ||||| | | ||| |||||||| || | || |||| ||| Sbjct 4220 TTCATATAGCGAATCTTGCCGAATATAGCACGCTCCTTCCATGCGTTATCATGGATACCC 4161 Query 119843 GCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTA-ACTCGTATTT 119901 | || | ||| | ||| ||||| || ||||||||||| ||||| | ||| |||||| Sbjct 4160 CCGACAGACCACATGCAGCCCACATAACCGTTGGGATCGCGGCCATCCAGACT-GTATTT 4102 Query 119902 ATCGTTTAAGTAGATAC-AGACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTA 119960 ||||| | | || | | || | | ||| || || || || ||||||| |||| Sbjct 4101 GTCGTTCAGCAATATGCTATACTC-CAGCGCCTGCTCTGGTGTTTCTGTCCATTCAAGTA 4043 Query 119961 tttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAA 120020 | || || ||||| ||||| | | ||||||||||||| || ||| |||| || | Sbjct 4042 TCTTCTTGGCCCAATACATTCTCAGAAATCCATGCATTTTGCCCTCATTGACCAGCTGCA 3983 Query 120021 GTTGTGCGGCGTTCCATAAGG 120041 ||| || | |||||| |||| Sbjct 3982 ATTGCGCCGAGTTCCA-AAGG 3963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517247332001400