Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20]
46,105 sequences; 137,224,182 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq2872 118 1e-21
SEQ17778 105 7e-18
>seq2872
Length=9359
Score = 118 bits (130), Expect = 1e-21
Identities = 514/802 (64%), Gaps = 22/802 (3%)
Strand=Plus/Plus
Query 16694 TTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTA 16753
|| ||||| ||||| |||||||| || | ||| || |||||||||| || |||||
Sbjct 3008 TTCTCGAAGAAGTTGGTTTTGCCATCCAAAGAGATCATCTCCATGAACGAGAATGGATTC 3067
Query 16754 GTAGC--TGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATT 16811
| | || |||| || | | || || || | | || | ||| || ||||| |
Sbjct 3068 TTTGTGTTGTAAATCTTGCCCACT--CCAAGCTCAACCAATAGGCGATCAGCGACAAACT 3125
Query 16812 CTATATATTGGCACATTAATTCGCAGTTCATTCCTAT-AAGACGTACCGGAAGAGCTTCC 16870
| ||||||| | |||| | | |||||||| || || ||| | || || || || ||
Sbjct 3126 CGATATATTCGGACATCAGAGCACAGTTCATGCCAATCAAGTTG-ACGGGCAGCGCATCG 3184
Query 16871 GTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTTCC--- 16927
|| | || ||||| ||| || || ||| | || || | | ||||||
Sbjct 3185 GTGAGGAACTCCTGCTCAATAGTCACAGCATCCGTTATGATTTCAATGATGCGTTCCCGA 3244
Query 16928 -TCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCC 16986
| || || || | | ||||| ||||| || || || || ||||| | ||
Sbjct 3245 CTAGGCCGCTGCACC----AAATGTTGGAACATAAGCACCGCAAAGTCACAATGCAGACC 3300
Query 16987 CTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTT 17046
|| || | ||| | |||||| || ||||| | || ||||| ||| || |||||
Sbjct 3301 TTCATCGCGAGAGATCAATTCGTTGGAGAATGTAAGTCCAGGCATAAGTCCACGCTTCTT 3360
Query 17047 TAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGC 17106
| ||| || || | || || |||| ||||| || || || || | ||||| ||
Sbjct 3361 CAGCCAGAAGATGGATGCAAAGCTCCCACTGAAGAAGATGCCTTCAACAGCAGCAAAAGC 3420
Query 17107 GATTAATCGTTCGGCGTACGTCGC-GTCTTTGTTACGA-ATCCATTTCTGCACCCACTCG 17164
|| | ||||| | | | || | ||| | | || ||||| | |||| ||
Sbjct 3421 AATAATACGTTCACCAAAGTTGGCAGCCTTCG--AAGAGATCCAAGAAAGAGCCCAGTCT 3478
Query 17165 GCTTTTTGCTTTATGCAATC--CATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCT 17222
|| || |||| | || | ||||||||| ||||| || || | | ||| | |
Sbjct 3479 GCCTTCCGCTTAA--CAGCCGGCATCGTTTCAATGGCATTGAAGAGATAGTCTCGCTGAT 3536
Query 17223 GTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCA 17282
| | || | ||||| || || ||||| | |||||||||||||| || | |||||||
Sbjct 3537 GAGGATCCCTGATATAGGTGTCAATGAGCACACTGTACATTTCGGAATGCACATTCTCCA 3596
Query 17283 TGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATC 17342
|||| ||||| || || |||||||| || || || | | || ||||| | || |
Sbjct 3597 TGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCGGTCACCTGCACTTCTTGGCTAAAAC 3656
Query 17343 GTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCT 17402
|||| | ||||||||||| || || || || || || || || ||||| | ||||
Sbjct 3657 GTTCGACCAGATTTTCGTTAACAATTCCATCAGAAGCAGCAAAGAAGGCCAACACATGCG 3716
Query 17403 TAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATAT 17462
||||||| || | ||||| | ||| || | | || ||||| | ||
Sbjct 3717 ATATGAAATGACGCTCATTATCCGTAAGCTTGGCCCAATCAGTCATGTCCTTGGACAGAT 3776
Query 17463 CCACTTCTTCGGGGGTCCAAAA 17484
||||||||||| |||||| ||
Sbjct 3777 CCACTTCTTCGACGGTCCAGAA 3798
>SEQ17778
Length=11298
Score = 105 bits (116), Expect = 7e-18
Identities = 184/261 (70%), Gaps = 5/261 (2%)
Strand=Plus/Minus
Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTGTCGTGGAGCCCC 119842
|||||||| || ||||| ||||| | | ||| |||||||| || | || |||| |||
Sbjct 4220 TTCATATAGCGAATCTTGCCGAATATAGCACGCTCCTTCCATGCGTTATCATGGATACCC 4161
Query 119843 GCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTA-ACTCGTATTT 119901
| || | ||| | ||| ||||| || ||||||||||| ||||| | ||| ||||||
Sbjct 4160 CCGACAGACCACATGCAGCCCACATAACCGTTGGGATCGCGGCCATCCAGACT-GTATTT 4102
Query 119902 ATCGTTTAAGTAGATAC-AGACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTA 119960
||||| | | || | | || | | ||| || || || || ||||||| ||||
Sbjct 4101 GTCGTTCAGCAATATGCTATACTC-CAGCGCCTGCTCTGGTGTTTCTGTCCATTCAAGTA 4043
Query 119961 tttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAA 120020
| || || ||||| ||||| | | ||||||||||||| || ||| |||| || |
Sbjct 4042 TCTTCTTGGCCCAATACATTCTCAGAAATCCATGCATTTTGCCCTCATTGACCAGCTGCA 3983
Query 120021 GTTGTGCGGCGTTCCATAAGG 120041
||| || | |||||| ||||
Sbjct 3982 ATTGCGCCGAGTTCCA-AAGG 3963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517247332001400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |