Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq3808 138 9e-28 >seq3808 Length=15542 Score = 138 bits (152), Expect = 9e-28 Identities = 357/538 (66%), Gaps = 16/538 (3%) Strand=Plus/Plus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 ||||| || || || | |||||||| |||||| | ||||||||||| || ||| | Sbjct 5515 GGGGATCTGGGTCCGGTCTACGGCTTTCAGTGGCGTCATTTTGGAGCCGAGTATCGCACC 5574 Query 18849 TGTCAATCAAACTATTTACAG----CAAGGAATCGATCAGCTGCAAACTGTTATAGATAC 18904 || | || | | ||||| ||||| |||||||||||||| || || ||||| Sbjct 5575 TG-CGATGA---TGACTACAGCGGACAAGGCATCGATCAGCTGCAGCAAGTGATTGATAC 5630 Query 18905 AATT-AAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATA 18963 ||| |||||| ||| | || || || ||||| ||| | |||||||| ||||| Sbjct 5631 GATTCGAAACAATCCCTCGGA-TCGTCGTATCATTATGTCGGCGTGGAATCCCTTGGATA 5689 Query 18964 TCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTA--CGTTGCAAAC-- 19019 | ||| ||||| ||| ||||| || ||| || ||||| || || |||| | Sbjct 5690 TACCCAAAATGGCACTGCCTCCTTGCCACTGCTTGGTGCAGTTCTATGTGTCGCAATCTC 5749 Query 19020 --GGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGT 19077 || ||| | ||||| || | |||||| || | || ||||| || ||||| || | Sbjct 5750 GAGGAGAACTCTCCTGTCATCTGTACCAGCGAAGTGCAGACATGGGGCTCGGGGTTCCTT 5809 Query 19078 TCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAA 19137 | ||||| || ||||| || || |||||||| | || ||||| || ||| | || Sbjct 5810 TTAACATCGCCTCTTATGCGCTGCTCACCTACATGATTGCCCATGTGACCGGATTGAAGC 5869 Query 19138 CCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTT 19197 | || || || | || || ||||| ||| | ||| | || | |||||| | || | | Sbjct 5870 CTGGTGACTTTGTCCACACCATGGGAGATTCTCATGTGTATCTTAATCATGTGGAACCAT 5929 Query 19198 TAAAAGTGCAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATG 19257 | || ||| ||| || || || |||||| ||||| |||| || | | Sbjct 5930 TGCAACAGCAACTAAAGCGGCAGCCTCGTCCATTTCCTAAGCTTAACATTAAGCGGCAGG 5989 Query 19258 TAACAGATATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACA 19315 | ||| |||| | |||||| | || |||||| | | | |||||| ||||| || Sbjct 5990 TCACAAATATTGAAGACTTTCGTTATGAAGATTTTGAAATCGTTGGATACAATCCTCA 6047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399279516829725