Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq61 484 8e-132 seq2872 275 7e-69 >seq61 Length=55249 Score = 484 bits (536), Expect = 8e-132 Identities = 1264/1911 (66%), Gaps = 34/1911 (2%) Strand=Plus/Minus Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858 |||| | |||||||||||| | | || || || || || || ||||| |||||||| Sbjct 28008 TTGTTGACTGTGAATTGAATAGCATTGGCAGCTGGCTTTGTGCGCAGATAATACATTCCT 27949 Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918 || || || || |||| | | ||||| || ||||| ||| || | || Sbjct 27948 GTCTTGAGGCCTGCCTTCCACGAGAAGAAATGAATGGATGTTAACTTGCCGTAGTTGGGT 27889 Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978 || || | || || || | |||||||| || || || || || || | || || ||| Sbjct 27888 TCGGCAACGTGAATGTTGAATGATTGACTCTGGTCAATAAAAGCACCGCGATCAGCTGCC 27829 Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 53037 || || ||| | | ||| | |||||||| | ||||| |||| || | || | || Sbjct 27828 ATCTTGATGGTTGACTTCACCGAGATTTCCCAGACGGTTTTGTAAAGATCCCGTACT-TC 27770 Query 53038 TTCTGGAAGG--TTTG-TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGAT 53094 | |||| | || | | || || || || |||| | | || || |||||| || Sbjct 27769 CTGAGGAATGGATTCGATGTTTTGTATGGAGCCACGACTGGCAATGATTTGATTCTTCAT 27710 Query 53095 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 53154 ||||||| |||||| | | ||||||||| | | | | ||| |||| || || | Sbjct 27709 GTCATCATCCCATAAATCTAGTTCGGTTAAATCCCGCAACAAATGATGATTTACCACATT 27650 Query 53155 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTC 53214 || ||||| ||||| || | || |||||||| || |||||||| || | ||||| Sbjct 27649 GAACTCTCCGGACAAAACGCGCCTGGTGTAAATGTTTGAAGTATACGGCTCAAAGGACTC 27590 Query 53215 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA-T 53273 |||||| |||| || || ||||| ||||| || ||||| || || || || | | | | Sbjct 27589 ATTATTACCCATGATCTGGGCAGTAGATGCCGTGGGCATTGGAGCTAC-AAGCAGCGAGT 27531 Query 53274 TTCTAAGACCGTATGTTCT--GATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA 53331 |||||| || ||| ||| |||||| |||||||| ||||| |||||| | Sbjct 27530 TTCTAACGCC--ATGCTCTTTGATTTTCAATTTTAGAGCAGTCCAATCCCAAAGGCTTGT 27473 Query 53332 CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACAT 53390 ||| || ||||| || || || | | || | || | | Sbjct 27472 GGGTGTCTTGTCCCACATATCGTACTGCAGAATTCCCTTGCTCACCGGACAA-CCAGCGT 27414 Query 53391 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 53450 | || || || || || ||||| | ||| || |||||||| ||||| | ||||| || | Sbjct 27413 AGGTTTCATAGGGACCGTCCTTTTGAGCCAGCTCACAACTGGCCTCAAGGGCACCATAGT 27354 Query 53451 AAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAAT 53510 | |||||||||||||||| || ||| || | |||| || ||| | ||| || Sbjct 27353 AGATGGTTTCGAAGATCTGCTGATTGAGCAATACGGCTTTGTCACTCTCATAGGGAAAAC 27294 Query 53511 TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 53570 | ||||| || ||||| || || || ||||| ||||| || || || | |||||| Sbjct 27293 GCATCAGAATTAAGGCGTCGGCAAAGCCCTGAACGCCAATGCCAATGGGACGATGTCTTA 27234 Query 53571 TATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGT 53630 ||| || | | || || || | ||||| ||||| ||||| || ||||| || | | Sbjct 27233 AATTGGATTTCTTTGCCTCGGGCAGCGGATAGTAATTGATATCAATGATTTTGTTCAAAT 27174 Query 53631 TTCTG---ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTA 53687 ||||| ||| || || || ||||||||||| ||||| ||| | ||| Sbjct 27173 TTCTGGTGACAGTT---TTAGTAACTTCCTTCAGTTTCTTGAAATCGAATGTTTTCTCTG 27117 Query 53688 ---TTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 53744 | |||||||| ||||| || || ||||||| ||| || ||||| | ||||| | Sbjct 27116 AAGTCACAAACATATTCAAGGCTATCGATGCCAAATTGCAGACGGCAATCTCATCGGGTG 27057 Query 53745 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 53804 ||| ||||| | || |||||||| || || || || |||||||| || | ||| || | Sbjct 27056 CCGAATATTCAACAATTTCAGTGCAGAGGTTGCTGCATTTGATGGTGCCAACATTCTGCT 26997 Query 53805 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCT 53864 |||| ||||| |||| || | ||||| | || ||| | || || ||||| |||| | Sbjct 26996 GATTGCTCTTCCTGTTGCAAGAGTCCTTGAAGAGCATGTACGGAGTGCCAGTCTCAACTT 26937 Query 53865 GGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATA-GATTTGTATCTCTTT 53923 | ||||| | ||| || | ||| | | || || || | | |||||| | | Sbjct 26936 GAGATTCAACAATGGCATACCAAAGAGTTTGTGCTTTAATCACACGATTTGCGCGACCCT 26877 Query 53924 TCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCA 53983 | || ||||| |||||||| ||||| || || |||||||| | ||||| || Sbjct 26876 -CGCTCTCGTACTTTGTATACAGCTTCTCAAAGTCATCCCCCCAAACGTCTTCCAAGCCG 26818 Query 53984 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 54043 ||||| | | ||||||| || |||||| || | | ||| ||| || |||||||| Sbjct 26817 GGACACTTGTGAGGACACAACAGCGACCAATCCTCATTGGCCTCCACACGCTTCATAAAC 26758 Query 54044 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 54103 ||||| || ||||| | || || ||||| | | ||| || || || || || || Sbjct 26757 AGATCGGGTATCCACAAGGCGTAGAAGAGATCACGAGCTCTGTGCTCTTCCTTGCCCGTG 26698 Query 54104 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTC 54163 |||||||| || || | |||| | | ||||| |||||||| ||||||| ||| |||| Sbjct 26697 TTCTTTTTGAGGTCCAAGAACTCAAAGATATCGGAATGCCAAGGTTCCAGGTAAATGGCA 26638 Query 54164 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 54223 | | | || || || ||| || || ||||| | || | ||| |||||| | ||| Sbjct 26637 AAAGCGCCTGGTCGCTTGCCGCCACCTTGATCGACATAACGAGCCACATTATTAAACACT 26578 Query 54224 CTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTG 54283 || | ||| || | | |||||| || | ||||| || || |||| || | || || Sbjct 26577 CTGAGCATGGGCACCAAACCATTTGAAGTGCCATTAGTGCCACAGATCGAGGTGCCCTTG 26518 Query 54284 GCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGC 54341 |||||||| | | | |||| || || || || || || ||| ||||| | ||| | Sbjct 26517 GCACGAATACAATGCACATTG--AGCCCAATGCCACCAGCGGATTTGGAGATCATTGCAC 26460 Query 54342 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATC---ATCCATCATGTTAAGTAGAA 54398 | | | | | | | ||||| || || ||| | |||| |||||| || | Sbjct 26459 ACTGCTCGACGGACTTGAAAATGCCTTCGATGGAATCGGAAACCAT--TGTTAA-AAGGA 26403 Query 54399 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 54458 |||| ||||| ||| ||||| | || | ||| |||||| || || || || |||| Sbjct 26402 AACACGATGACATCTGGGGACGATTGGTGGCAGCAGCAAATAACGTTGGCGATGCATGCG 26343 Query 54459 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGAT 54518 |||| | ||| || | |||||||| ||||||| ||| || || || || || Sbjct 26342 TAAAATAGCGTTCCGATAACAGATTGTAAGTCTCGACAGCGGAATCGATGTCTTCGCCAT 26283 Query 54519 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 54578 | ||||| | || || | ||| | ||||||||| || | ||| |||| ||| || | Sbjct 26282 GGATTCCAATCGCCACTCTCATCAGCATGTGCTGCGGACGTTCGGCGATTTTGCCATTGA 26223 Query 54579 TTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 54638 | || ||||| || || || | || || || |||||||||||||| ||| || | Sbjct 26222 TCTTTAGCAAATACGAACGCTCGAGGGTCTTGAAGCCAAAATAGTTGTAGCCAAAATCAC 26163 Query 54639 GTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACAT 54689 | || || || || ||||||| || ||| | ||| ||||| |||| Sbjct 26162 GATCATAGATGATCGCTGAGTTCAGGCGATCTGAGTTTTTCTTAACGACAT 26112 >seq2872 Length=9359 Score = 275 bits (304), Expect = 7e-69 Identities = 604/896 (67%), Gaps = 22/896 (2%) Strand=Plus/Plus Query 23788 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 23844 ||||||| || ||||||| | ||| |||||| || || |||||||||| Sbjct 2928 TTTAAAAATCCGCATCTAATGTAAACACATTGTCCAAACGATTCGATGTAACTCCCATGC 2987 Query 23845 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 23904 || ||||||||||| || ||||| || || ||||| || || || || || | | Sbjct 2988 GCTGATATTCACCCACTTTCTTCTCGAAGAAGTTGGTTTTGCCATCCAAAGAGATCATCT 3047 Query 23905 CCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATCA 23964 ||||||| | ||||||| | || || || | | ||| | ||| | || Sbjct 3048 CCATGAACGAGAATGGATTCTTTGTGTTGTAAATCTTGCCCACTCCAAGCTCA---ACCA 3104 Query 23965 AT---CTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAA 24021 || | ||| ||||||||||| |||||| ||||| |||| ||||| || || | Sbjct 3105 ATAGGCGATCAGCGACAAACTCGATATATTCGGACATCAGAGCACAGTTCATGCCAATCA 3164 Query 24022 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 24081 || || || || || | || || || || || ||||||| || || || ||||| Sbjct 3165 AGTTGACGGGCAGCGCATCGGTGAGGAACTCCTGCTCAATAGTCACAGCATCCGTTAT-- 3222 Query 24082 TAGATCTTACTGTTTC-TTC---ACTCGGTGGATACAATAAATGTTTAAACATCAAACAT 24137 ||| | | || | | ||| ||| || | | || ||||||| ||||| || || Sbjct 3223 --GATTTCAATGATGCGTTCCCGACTAGGCCGCTGCACCAAATGTTGGAACAT-AAGCAC 3279 Query 24138 -GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 24196 || || || || || ||||| || || | | || ||||||||||| || || ||||| Sbjct 3280 CGCAAAGTCACAATGCAGACCTTCATCGCGAGAGATCAATTCGTTGGAGAATGTAAGTCC 3339 Query 24197 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAAT 24256 ||||| || |||||||| || ||||| || ||||| ||||| ||| ||||| || Sbjct 3340 AGGCATAAGTCCACGCTTCTTCAGCCAGAAGATGGATGCAAAGCTCCCACTGAAGAAGAT 3399 Query 24257 TCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC-GCTGTC--ATGTAT 24313 ||||| || || ||||| ||||||| | ||| ||| | ||| || || | || Sbjct 3400 GCCTTCAACAGCAGCAAAAGCAATAATACGTTCACCAAAGTTGGCAGCCTTCGAAGAGAT 3459 Query 24314 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 24373 ||| ||||||| || |||||| || ||| ||||| || || || ||||| || Sbjct 3460 CCAAGAAAGAGCCCAGTCTGCCTTCCGCTTAACAGCCGGCATCGTTTCAATGGCATTGAA 3519 Query 24374 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 24433 |||||||| | | || | ||| | | ||| || ||||| | | ||| |||||||| Sbjct 3520 GAGATAGTCTCGCTGATGAGGATCCCTGATATAGGTGTCAATGAGCACACTGTACATTTC 3579 Query 24434 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 24493 ||||| | || || ||||| || || || || || || || | |||||||| | ||| Sbjct 3580 GGAATGCACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCGGTCACCTG 3639 Query 24494 TACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 24553 |||||| | ||| ||||| | | |||||| || || ||||| ||| || ||||| Sbjct 3640 CACTTCTTGGCTAAAACGTTCGACCAGATTTTCGTTAACAATTCCATCAGAAGCAGCAAA 3699 Query 24554 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATT 24613 || ||||| ||||| ||| |||| || | || || || ||||||| | Sbjct 3700 GAAGGCCAACACATGCGATATGAAATGACGCTCATTATCCGTAAGCTTGGCCCAATCAGT 3759 Query 24614 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 24669 || || || || | |||||||||||| || ||||| || ||||| || |||| || Sbjct 3760 CATGTCCTTGGACAGATCCACTTCTTCGACGGTCCAGAACGATGCTTCAGCCTGTT 3815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593379430820400