Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value SEQ36764 136 5e-27 seq3808 105 8e-18 >SEQ36764 Length=622 Score = 136 bits (150), Expect = 5e-27 Identities = 134/173 (77%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 145738 TCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCT 145797 || ||| ||| ||||||| | ||||||| ||||| |||| |||| | |||| ||| Sbjct 302 TCGCCGACCTCCAGGCCCGCCTGCTGGGCGAACATGTGGGTCCGCAGCGCGTAGGAGGCG 361 Query 145798 ATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGC 145857 |||||||| ||||| || || ||||||| | ||||||||| ||||||||||| ||| Sbjct 362 ATGTTGAACGGCACGCCGAGGAACATGTCCGCGCTGCGCTGGTAGAGCTGGCAGGACAGC 421 Query 145858 TCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 |||| | || ||||||| |||| |||| |||||||| || ||||| ||||| Sbjct 422 GTCCCGTCGGCGACGTAGAGCTGGAACAGCAGGTGGCACGGGGGCAGCGCCAT 474 >seq3808 Length=15542 Score = 105 bits (116), Expect = 8e-18 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 145687 GGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGC 145746 || ||||| || || || || || || | || |||| | ||||| ||||| || ||| Sbjct 5927 GGTTCCACATGATTAAGATACACATGAGAATCTCCCATGGTGTGGACAAAGTCACCAGGC 5868 Query 145747 TCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAG 145806 | | || || | ||||| | ||||||||| ||||| | || ||| ||||| || Sbjct 5867 TTCAATCCGGTCACATGGGCAATCATGTAGGTGAGCAGCGCATAAGAGGCGATGTTAAAA 5808 Query 145807 GGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAG--CTCCCCG- 145863 || ||||| ||||||||||| | ||||||||||| || |||||||| |||| || Sbjct 5807 GGAACCCCGAGCCCCATGTCTGCACTTCGCTGGTACAGATGACAGGAGAGTTCTCCTCGA 5748 Query 145864 ---CCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 || ||| |||||||| || | |||||| || ||||| ||||| Sbjct 5747 GATTGCGACACATAGAACTGCACCAAGCAGTGGCAAGGAGGCAGTGCCAT 5698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589736731364200