Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq4710 114 1e-20 seq4983 100 2e-16 SEQ18597 93.3 4e-14 >seq4710 Length=78879 Score = 114 bits (126), Expect = 1e-20 Identities = 166/233 (71%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAG-TGGACTCCTTTTGAATGTTATAGTCCGC 21007 || || ||||| | ||||||| ||||| | | |||||||| || ||||| ||||| | Sbjct 8603 CCACCACGCAGACGCAGCACCAAGTGCAAGGGTCGACTCCTTCTGGATGTTGTAGTCTGA 8662 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 ||| || | | ||||||||||| ||||| || | || || | |||||| || ||| Sbjct 8663 CAGAGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCTGGGGG 8722 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | ||||||||||| |||||| ||||| | | | |||||| |||||| Sbjct 8723 GATTCCTTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTATCAGATGGCTCCAC 8782 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 |||| ||| |||||||| || || | || || || || ||||||||||||| Sbjct 8783 CTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATTTGCATTTTGA 8835 >seq4983 Length=3163 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| || | || |||||||| || ||||| ||||| | Sbjct 644 CCACCACGCAGACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAG 703 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || |||| ||| || || || | || | | |||||| || ||| Sbjct 704 AGGGTACGACCATCTTCCAACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 763 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| || || | ||| |||||| |||||| Sbjct 764 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCAGAGGGCTCAACC 823 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 |||| ||||||||||||||| || || || || ||||| || ||||| || Sbjct 824 TCCAAGGTAATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCATATT 873 >SEQ18597 Length=3366 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 29102 GCGTGTTGCTGCCACGGCGCGTCGTCGGGTTCCCAATCCTTCAGACCGCCGTCGCAGCAA 29161 || || |||| ||| ||| |||||| | ||||||||||| || || ||| | |||| Sbjct 1261 GCATGCTGCTCCCAGGGCTCGTCGTTGTCGTCCCAATCCTTGAGGCCACCGCCACAGCTG 1320 Query 29162 AAGCACCGCGTCTTGTCGCCCTGGCCAGTGTAAAAGAATCCGGCCTCGGCCAACTCTTCG 29221 ||||| ||| || || ||| ||||| ||||| || |||||||| | || | Sbjct 1321 AAGCAACGCACACGATCCCCGACGCCGGTGTAGAAGAAACCCGCCTCGGCGAGCTGCTGC 1380 Query 29222 GGCCGCTGTTTCAACCCGCGGGGCCACTCCGCAAAGGTGCGCAAACGCGCGGCTTCCGTG 29281 ||| ||| |||| ||| ||||| ||| | ||| |||||| |||||| | || || Sbjct 1381 GGCTTCTGCTTCATGTTGCGCGGCCAATCCTCGAAGCTGCGCAGACGCGCCGTCTCGATG 1440 Query 29282 GCATACTGCGGGTGCGCGG 29300 ||||||| ||| | | ||| Sbjct 1441 GCATACTCCGGATACTCGG 1459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422021930576180