Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20]
46,105 sequences; 137,224,182 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq2872 307 1e-78
seq4710 120 3e-22
seq4983 109 6e-19
>seq2872
Length=9359
Score = 307 bits (340), Expect = 1e-78
Identities = 522/749 (70%), Gaps = 8/749 (1%)
Strand=Plus/Minus
Query 116652 AAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCG 116711
|| |||| || || ||||||||||||||||| || ||||| ||||||||||||| || |
Sbjct 3815 AACAGGCTGAAGCATCGTTCTGGACCGTCGAAGAAGTGGATCTGTCCAAGGACATGACTG 3756
Query 116712 ACTGGGAGC-GCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTC 116770
| |||| |||| | || || ||||| |||||||| ||| ||| ||||||| ||
Sbjct 3755 ATTGGGCCAAGCTT-ACGGATAATGAGCGTCATTTCATATCGCATGTGTTGGCCTTCTTT 3697
Query 116771 GCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAG 116830
|| || || || || || ||||| ||||||||||| ||||| || || ||||||
Sbjct 3696 GCTGCTTCTGATGGAATTGTTAACGAAAATCTGGTCGAACGTTTTAGCCAAGAAGTGCAG 3637
Query 116831 GTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAA 116890
||| ||||||| || ||||| || ||||| ||||| ||||||||||| ||||| || |||
Sbjct 3636 GTGACCGAGGCACGTTGCTTTTATGGCTTCCAGATTGCCATGGAGAATGTGCATTCCGAA 3577
Query 116891 ATGTATTCGACCCTCATCGACACGTACGT--GCGCTCTTCGGAGGAGAAGCTCCGTTTGT 116948
||||| ||||| ||||| || | | | || || | || || | | |
Sbjct 3576 ATGTACAGTGTGCTCATTGACACCTATATCAGGGATCCTCATCAGCGAGACT--ATCTCT 3519
Query 116949 TGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGA 117008
| || ||||| || ||||||||| || || |||||| || ||||| || ||||
Sbjct 3518 TCAATGCCATTGAAACGATGCCGGCTGTTAAGCGGAAGGCAGACTGGGCTCTTTCTTGGA 3459
Query 117009 TCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCG 117068
|| | | | ||| ||| || || || | | || || || || || || |||
Sbjct 3458 TCTCTTCGAAGGCTGCCAACTTTGGTGAACGTATTATTGCTTTTGCTGCTGTTGAAGGCA 3399
Query 117069 TCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCG 117128
||||||| || || || || |||| || ||||| ||||| || || || ||||| |
Sbjct 3398 TCTTCTTCAGTGGGAGCTTTGCATCCATCTTCTGGCTGAAGAAGCGTGGACTTATGCCTG 3339
Query 117129 GCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGC-C 117187
| || || ||| |||||| | ||||| | || || ||||||||||| ||||||||
Sbjct 3338 GACTTACATTCTCCAACGAATTGATCTCTCGCGATGAAGGTCTGCATTGTGACTTTGCGG 3279
Query 117188 TGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTC 117247
|| || ||||| | |||||||||||||| || || || ||| ||| || ||| |
Sbjct 3278 TGCTT-ATGTTCCAACATTTGGTGCAGCGGCCTAGTCGGGAACGCATCATTGAAATCATA 3220
Query 117248 ACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTG 117307
|| || || || | || |||||| ||||||||||| |||||||| || || |
Sbjct 3219 ACGGATGCTGTGACTATTGAGCAGGAGTTCCTCACCGATGCGCTGCCCGTCAACTTGATT 3160
Query 117308 GGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTC 117367
|| | || || | |||||| |||| |||||||| ||||| || | || || |
Sbjct 3159 GGCATGAACTGTGCTCTGATGTCCGAATATATCGAGTTTGTCGCTGATCGCCTATTGGTT 3100
Query 117368 GAGCTGGTCGGCGCCAAGCACTACAACAC 117396
||||| | | | |||| ||||||||
Sbjct 3099 GAGCTTGGAGTGGGCAAGATTTACAACAC 3071
Score = 95.1 bits (104), Expect = 1e-14
Identities = 70/82 (85%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635
||||| ||||||| ||||| ||||||||||| || ||||||||||| ||||||| |||
Sbjct 4237 GAGCCATTGCTGCGAGAGAATCCCCGCCGGTTTGTCATTTTCCCCATTCAATACCATGAC 4178
Query 116636 ATGTGGCGCATGTACAAAAAGG 116657
|| |||| |||||||||||||
Sbjct 4177 ATTTGGCAAATGTACAAAAAGG 4156
>seq4710
Length=78879
Score = 120 bits (132), Expect = 3e-22
Identities = 161/220 (73%), Gaps = 3/220 (1%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
||||||||||| ||||| || || || || || || ||||||||| | || || || |||
Sbjct 8833 AAAATGCAAATCTTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAGGTGGA-GCC 8775
Query 40747 ACC-GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
| | || | | | | | | |||| || || | ||||| || || |||||| | ||
Sbjct 8774 ATCTGATACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAAGGAATCCCCCCAGA 8715
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
||||| || ||||||| ||| ||||| |||||||| || | ||||| || |||||
Sbjct 8714 TCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACTCTGTCAGACTA 8655
Query 40866 CAACATCCAGAAGGAGGCCACGC-TGCATCTAGTGTTGCG 40904
|||||||||||||||| | || | |||| | ||| ||||
Sbjct 8654 CAACATCCAGAAGGAGTCGACCCTTGCACTTGGTGCTGCG 8615
>seq4983
Length=3163
Score = 109 bits (120), Expect = 6e-19
Identities = 151/209 (72%), Gaps = 2/209 (1%)
Strand=Plus/Minus
Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744
|||| ||||| || || ||||| || | || ||||| ||||| ||| | || || ||
Sbjct 875 GAAATATGCAGATCTTTGTAAAGACATTGACTGGCAAGACCATTACCTTGGAGGTTGAGC 816
Query 40745 CCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803
|| | || | | | | |||| |||||| || || | ||||| ||||| || ||| |
Sbjct 815 CCTCTGATACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCA 757
Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863
|| ||||| || | |||| ||| || || ||| |||| || | || |||||| ||||
Sbjct 756 GATCAGCAGCGTTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGTCGTACCCTCTCCGAC 697
Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCA 40892
|||||||||||||||||| | || || ||
Sbjct 696 TACAACATCCAGAAGGAGTCAACCCTTCA 668
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 514922272734800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |