Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2872 307 1e-78 seq4710 120 3e-22 seq4983 109 6e-19 >seq2872 Length=9359 Score = 307 bits (340), Expect = 1e-78 Identities = 522/749 (70%), Gaps = 8/749 (1%) Strand=Plus/Minus Query 116652 AAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCG 116711 || |||| || || ||||||||||||||||| || ||||| ||||||||||||| || | Sbjct 3815 AACAGGCTGAAGCATCGTTCTGGACCGTCGAAGAAGTGGATCTGTCCAAGGACATGACTG 3756 Query 116712 ACTGGGAGC-GCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTC 116770 | |||| |||| | || || ||||| |||||||| ||| ||| ||||||| || Sbjct 3755 ATTGGGCCAAGCTT-ACGGATAATGAGCGTCATTTCATATCGCATGTGTTGGCCTTCTTT 3697 Query 116771 GCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAG 116830 || || || || || || ||||| ||||||||||| ||||| || || |||||| Sbjct 3696 GCTGCTTCTGATGGAATTGTTAACGAAAATCTGGTCGAACGTTTTAGCCAAGAAGTGCAG 3637 Query 116831 GTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAA 116890 ||| ||||||| || ||||| || ||||| ||||| ||||||||||| ||||| || ||| Sbjct 3636 GTGACCGAGGCACGTTGCTTTTATGGCTTCCAGATTGCCATGGAGAATGTGCATTCCGAA 3577 Query 116891 ATGTATTCGACCCTCATCGACACGTACGT--GCGCTCTTCGGAGGAGAAGCTCCGTTTGT 116948 ||||| ||||| ||||| || | | | || || | || || | | | Sbjct 3576 ATGTACAGTGTGCTCATTGACACCTATATCAGGGATCCTCATCAGCGAGACT--ATCTCT 3519 Query 116949 TGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGA 117008 | || ||||| || ||||||||| || || |||||| || ||||| || |||| Sbjct 3518 TCAATGCCATTGAAACGATGCCGGCTGTTAAGCGGAAGGCAGACTGGGCTCTTTCTTGGA 3459 Query 117009 TCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCG 117068 || | | | ||| ||| || || || | | || || || || || || ||| Sbjct 3458 TCTCTTCGAAGGCTGCCAACTTTGGTGAACGTATTATTGCTTTTGCTGCTGTTGAAGGCA 3399 Query 117069 TCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCG 117128 ||||||| || || || || |||| || ||||| ||||| || || || ||||| | Sbjct 3398 TCTTCTTCAGTGGGAGCTTTGCATCCATCTTCTGGCTGAAGAAGCGTGGACTTATGCCTG 3339 Query 117129 GCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGC-C 117187 | || || ||| |||||| | ||||| | || || ||||||||||| |||||||| Sbjct 3338 GACTTACATTCTCCAACGAATTGATCTCTCGCGATGAAGGTCTGCATTGTGACTTTGCGG 3279 Query 117188 TGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTC 117247 || || ||||| | |||||||||||||| || || || ||| ||| || ||| | Sbjct 3278 TGCTT-ATGTTCCAACATTTGGTGCAGCGGCCTAGTCGGGAACGCATCATTGAAATCATA 3220 Query 117248 ACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTG 117307 || || || || | || |||||| ||||||||||| |||||||| || || | Sbjct 3219 ACGGATGCTGTGACTATTGAGCAGGAGTTCCTCACCGATGCGCTGCCCGTCAACTTGATT 3160 Query 117308 GGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTC 117367 || | || || | |||||| |||| |||||||| ||||| || | || || | Sbjct 3159 GGCATGAACTGTGCTCTGATGTCCGAATATATCGAGTTTGTCGCTGATCGCCTATTGGTT 3100 Query 117368 GAGCTGGTCGGCGCCAAGCACTACAACAC 117396 ||||| | | | |||| |||||||| Sbjct 3099 GAGCTTGGAGTGGGCAAGATTTACAACAC 3071 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| ||||||| ||||| ||||||||||| || ||||||||||| ||||||| ||| Sbjct 4237 GAGCCATTGCTGCGAGAGAATCCCCGCCGGTTTGTCATTTTCCCCATTCAATACCATGAC 4178 Query 116636 ATGTGGCGCATGTACAAAAAGG 116657 || |||| ||||||||||||| Sbjct 4177 ATTTGGCAAATGTACAAAAAGG 4156 >seq4710 Length=78879 Score = 120 bits (132), Expect = 3e-22 Identities = 161/220 (73%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| || || || || || || ||||||||| | || || || ||| Sbjct 8833 AAAATGCAAATCTTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAGGTGGA-GCC 8775 Query 40747 ACC-GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | | || | | | | | | |||| || || | ||||| || || |||||| | || Sbjct 8774 ATCTGATACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAAGGAATCCCCCCAGA 8715 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| || ||||||| ||| ||||| |||||||| || | ||||| || ||||| Sbjct 8714 TCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACTCTGTCAGACTA 8655 Query 40866 CAACATCCAGAAGGAGGCCACGC-TGCATCTAGTGTTGCG 40904 |||||||||||||||| | || | |||| | ||| |||| Sbjct 8654 CAACATCCAGAAGGAGTCGACCCTTGCACTTGGTGCTGCG 8615 >seq4983 Length=3163 Score = 109 bits (120), Expect = 6e-19 Identities = 151/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||| ||||| || || ||||| || | || ||||| ||||| ||| | || || || Sbjct 875 GAAATATGCAGATCTTTGTAAAGACATTGACTGGCAAGACCATTACCTTGGAGGTTGAGC 816 Query 40745 CCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803 || | || | | | | |||| |||||| || || | ||||| ||||| || ||| | Sbjct 815 CCTCTGATACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCA 757 Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 || ||||| || | |||| ||| || || ||| |||| || | || |||||| |||| Sbjct 756 GATCAGCAGCGTTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGTCGTACCCTCTCCGAC 697 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||||||||| | || || || Sbjct 696 TACAACATCCAGAAGGAGTCAACCCTTCA 668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514922272734800