Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq3808 96.9 2e-15 >seq3808 Length=15542 Score = 96.9 bits (106), Expect = 2e-15 Identities = 269/406 (66%), Gaps = 10/406 (2%) Strand=Plus/Minus Query 97057 TGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCA 97116 ||||| | ||| | |||| |||||| | ||||| | ||| || ||||| || | Sbjct 5918 TGATTAAGATACACATGAGAATCTCCCATGGTGTGGACAAAGTCACCAGGCTTCAATCCG 5859 Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 || |||||||| ||||| | || | || | ||| || ||||||||||| ||||| Sbjct 5858 GTCACATGGGCAATCATGTAGGTGAGCAGCGCATAAGAGGCGATGTTAAAAGGAACCCCG 5799 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCC-----ATCAC-AC 97230 || ||||| || || || || || | |||||||| || | ||| || | || Sbjct 5798 AGCCCCATGTCTGCACTTCGCTGGTACAGATGACAGGAGAGTTCTCCTCGAGATTGCGAC 5739 Query 97231 ACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACA 97290 ||||| ||||| ||| || || || |||| |||||||| || | ||| ||| | Sbjct 5738 ACATAGAACTGCACCAAGCAGTGGCAAGGAGGCAGTGCCATTTTGGGTATATCCAAGGGA 5679 Query 97291 TTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGT-GTATGGTATTAATTAT 97349 ||||| || |||| | || | | ||| | ||| |||| | | || |||| ||| | Sbjct 5678 TTCCACGCCGACATAATGATACGACGATCCG-AGGGATTGTTTCGAATCGTATCAATCAC 5620 Query 97350 CTGCTTTAATTGATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCT-TGATATTCTG 97408 |||| | ||||| | ||||| ||| | || | | | | | | |||| || | Sbjct 5619 TTGCTGCAGCTGATCGATGCCTTGTCCGCTGTAGTCAT-CATCGCAGGTGCGATACTCGG 5561 Query 97409 CTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCC 97454 |||||||||| | ||| || || || || || || || || || || Sbjct 5560 CTCCAAAATGACGCCACTGAAAGCCGTAGACCGGACCCAGATCCCC 5515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346589140444850