Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_002166.1 Length=40751 Score E Sequences producing significant alignments: (Bits) Value SEQ43492 165 2e-36 >SEQ43492 Length=1174 Score = 165 bits (182), Expect = 2e-36 Identities = 275/393 (70%), Gaps = 16/393 (4%) Strand=Plus/Minus Query 12286 GGATGGGGATTTACGCACCATCCAGCCGCGCGGAGAACTGCCACTGCTGGAGCGTCCGTT 12345 ||| || || || | || ||| ||||||||| ||| |||| | | | | || | | | Sbjct 909 GGAGGGTGACTTGAGAACGATCATGCCGCGCGGGGAATTGCCGCGGATAGGTCGCCAGGT 850 Query 12346 TGTGCTTGGACACTTCGACTGCTGGGGGCTGGTAATGAGCTATTTCCGGCAAACGCATGG 12405 ||||| || || |||||||||||||||| | ||||||||||||||||| ||| || Sbjct 849 CGTGCTGGGGCATACCGACTGCTGGGGGCTGATTATGAGCTATTTCCGGCAGGAGCACGG 790 Query 12406 TATCGAGCTCCACGATTACCGGGTGGATTATCCCTGGTGGGAAAACGCCTATCCGGACAA 12465 || | |||||| |||||||| || |||||||| |||||||| | | || || Sbjct 789 CATAGCGCTCCAGGATTACCGCGTTGATTATCCGTGGTGGGAGCGGGGC------GAAAA 736 Query 12466 TTTTTATCAGGATTGCTGGTATGAATGCGGATTCAGGGAGTTTGACGGCCCGCCTCAGGA 12525 | | || ||| |||| | || ||||| || ||||||| |||||||| || | Sbjct 735 TCTCTACATGGACAACTGGCACGACTGCGGTTTTCGGGAGTTCGACGGCCCACCGATGCC 676 Query 12526 AGGGGACCTCGTCATCATGCAGGT----GCAGGCCGATAAGTGGAATCATGCCGGGATTT 12581 || ||| | || || |||| ||| ||| ||| | | ||| |||||||| ||| Sbjct 675 GGGTGACATGGTGATTATGCTGGTTTCCGCA--CCGGT--GGCGAACCATGCCGGTATTC 620 Query 12582 TACTGGAGGGTAACATGCTGCTGCACCACCTGTACGGACAT-CTGAGCCAGCGCGTGCCG 12640 | || || | | ||| |||||| |||| ||||||| ||| ||||||||||| ||||| Sbjct 619 TGCTTGAAGATGGTATGTTGCTGCCCCACATGTACGG-CATGCTGAGCCAGCGGGTGCCT 561 Query 12641 TATGGGGGCTACTGGCAGGAAAGGACGATGAAG 12673 || || || || ||| | || | || ||||| Sbjct 560 TACGGTGGTTATTGGAAAGAGCGAACTGTGAAG 528 Score = 104 bits (114), Expect = 6e-18 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 11997 AGAAAACCATCGATGCGATTATGGCGCATGCTGCAGCTGAATATCCTCGTGAGTGCTGCG 12056 |||||||||| | || ||||||||||| || | ||||| ||||| | ||||| |||| Sbjct 1121 AGAAAACCATAGCGGCTATTATGGCGCACGCCGAGGCTGAGTATCCGTGCGAGTGTTGCG 1062 Query 12057 GTGTGGTGGCACAGAAGAGCCGGGTAGAGAAATATTTTCCATGTCGTAACCTCGCTACCG 12116 | | ||||| ||||| ||| || ||| || ||||| || ||||| || || | Sbjct 1061 GCATCGTGGCGCAGAAATCCCGCGTTGAGCGTTACTTTCCCTGCCGTAATCTGGCGGACA 1002 Query 12117 AGCCGACAGAACATTTTCACCTGTCGCCAGAAGACTATGCAGCTGCTGAGGACTGGGGTA 12176 | || || || || ||||||||||| ||||| || |||| | |||| || ||||| | Sbjct 1001 ATCCCACCGAGCAGTTTCACCTGTCACCAGAGGATTATGTGCCCGCTGCCGAGTGGGGGA 942 Query 12177 CG 12178 || Sbjct 941 CG 940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130210271231130