Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_002167.1 Length=39732 Score E Sequences producing significant alignments: (Bits) Value SEQ43492 178 3e-40 >SEQ43492 Length=1174 Score = 178 bits (196), Expect = 3e-40 Identities = 278/393 (71%), Gaps = 16/393 (4%) Strand=Plus/Minus Query 13098 GGAGGGGGATTTACGCACCATCCAGCCGCGCGGAGAACTGCCGCTGCTGGAGCGTCCGTT 13157 |||||| || || | || ||| ||||||||| ||| |||||| | | | || | | | Sbjct 909 GGAGGGTGACTTGAGAACGATCATGCCGCGCGGGGAATTGCCGCGGATAGGTCGCCAGGT 850 Query 13158 TGTGCTTGGACACTTCGACTGCTGGGGGCTGGTAATGAGCTATTTCCGGCAAACGCATGG 13217 ||||| || || |||||||||||||||| | ||||||||||||||||| ||| || Sbjct 849 CGTGCTGGGGCATACCGACTGCTGGGGGCTGATTATGAGCTATTTCCGGCAGGAGCACGG 790 Query 13218 TATCGAGCTCCACGATTACCGGGTGGATTATCCCTGGTGGGAAAACGACTATCCGGACAA 13277 || | |||||| |||||||| || |||||||| |||||||| | | || || Sbjct 789 CATAGCGCTCCAGGATTACCGCGTTGATTATCCGTGGTGGGAGCGGGGC------GAAAA 736 Query 13278 TTTTTATCAGGATTGCTGGTATGAATGCGGATTCAGGGAGTTTGACGGCCCGCCTCAGGA 13337 | | || ||| |||| | || ||||| || ||||||| |||||||| || | Sbjct 735 TCTCTACATGGACAACTGGCACGACTGCGGTTTTCGGGAGTTCGACGGCCCACCGATGCC 676 Query 13338 AGGGGACCTCGTCATCATGCAGGT----GCAGGCCGATAAGTGGAATCATGCCGGGATTT 13393 || ||| | || || |||| ||| ||| ||| | | ||| |||||||| ||| Sbjct 675 GGGTGACATGGTGATTATGCTGGTTTCCGCA--CCGGT--GGCGAACCATGCCGGTATTC 620 Query 13394 TACTGGAGGGTAACATGCTGCTGCACCACCTGTACGGACAT-CTGAGCCAGCGCGTGCCG 13452 | || || | | ||| |||||| |||| ||||||| ||| ||||||||||| ||||| Sbjct 619 TGCTTGAAGATGGTATGTTGCTGCCCCACATGTACGG-CATGCTGAGCCAGCGGGTGCCT 561 Query 13453 TATGGTGGCTACTGGCAGGAAAGGACGATGAAg 13485 || ||||| || ||| | || | || ||||| Sbjct 560 TACGGTGGTTATTGGAAAGAGCGAACTGTGAAG 528 Score = 109 bits (120), Expect = 1e-19 Identities = 93/115 (81%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 12809 AGAAAACCATAGATGCGATTATGGCGCATGCTGCAGCTGAATATCCTCTTGAGTGTTGCG 12868 |||||||||||| || ||||||||||| || | ||||| ||||| |||||||||| Sbjct 1121 AGAAAACCATAGCGGCTATTATGGCGCACGCCGAGGCTGAGTATCCGTGCGAGTGTTGCG 1062 Query 12869 GCGTGGTGGCGCAGAAAAGCCGCGTTGAACGTTATTTCCCGTGCCGGAATCTTGC 12923 || | |||||||||||| ||||||||| ||||| || || ||||| ||||| || Sbjct 1061 GCATCGTGGCGCAGAAATCCCGCGTTGAGCGTTACTTTCCCTGCCGTAATCTGGC 1007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126951256508940