Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20]
46,105 sequences; 137,224,182 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq61 158 1e-33
SEQ10860 109 5e-19
seq4983 109 5e-19
seq4710 109 5e-19
>seq61
Length=55249
Score = 158 bits (174), Expect = 1e-33
Identities = 481/732 (66%), Gaps = 26/732 (4%)
Strand=Plus/Minus
Query 133221 TGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAAC 133280
|| || ||||| | ||||| |||| | |||||| ||| || | || || || ||
Sbjct 27663 TGATTTACCACATTGAACTCTCCGGACAAAACGCGCCTGGTGTAAATGTTTGAAGTATAC 27604
Query 133281 GGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCC 133340
|| || || || || || || || | ||||| || || | ||||||||||| ||
Sbjct 27603 GGCTCAAAGGACTCATTATTACCCATGATCTGGGCAGTAGATGCCGTGGGCATTGGAGCT 27544
Query 133341 ACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCC 133400
|| | || |||||||| ||||| | || || || || | | | | |||| |||
Sbjct 27543 ACAAGCAGCGAGTTTCTAACGCCATGCTCTTTGATTTTCAATTTTAGAGCAGTCCAATCC 27484
Query 133401 CACAGA-TTGTTGGAATGATAGACGCCGTTCTCGTCGT-CGTAGTTGTGAAAATGCAAAA 133458
|| || |||| || || ||| ||| | || | || | |||| ||
Sbjct 27483 CAAAGGCTTGTGGG--TG-----------TCTTGTCCCACATA-TCGT---ACTGCAGAA 27441
Query 133459 TACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCCAGCT 133518
| ||| |||||||||||| | | ||| | ||||||||| |||| ||| |||||||
Sbjct 27440 TTCCCTTGCTCACCGGACAACCAGCGTAGGTTTCATAGGGACCGTCCTTTTGAGCCAGCT 27381
Query 133519 CGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGATTGAATAGTTGACGAACC 133578
| || || ||||| | || || |||| |||||||| ||| | |||| ||
Sbjct 27380 CACAACTGGCCTCAAGGGCACCATAGTAGATGGTTTCGAAGATCTGCTGATTGAGCAATA 27321
Query 133579 TGGCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGGCCAAACCCTGT 133637
||| | ||| || || |||| || || | |||| || |||||||| || |||||
Sbjct 27320 CGGCTTTGTCACTCTCATAGG-GAAAACGCATCAGAATTAAGGCGTCGGCAAAGCCCTGA 27262
Query 133638 ATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGGGATAG 133697
| ||| | ||| ||||| |||||| || |||| ||| | ||||| | ||||||
Sbjct 27261 ACGCCAATGCCAATGGGACGATGTCTTAAATTGGATTTCTTTGCCTCGGGCAGCGGATAG 27202
Query 133698 TGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAATGTTTCAGC 133757
| |||| || ||||| ||||| | ||| | | || | ||||||| | | |||||
Sbjct 27201 TAATTGATATCAATGATTTTGTTCAAATTTCTGGTGACAGTTTTAGTAACTTCCTTCAGT 27142
Query 133758 AAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGCAATACTGGCT 133817
| || ||||| || | || ||| || || | || | ||| || ||
Sbjct 27141 TTCTTGAAATCGAATGTTTT--CTCTGAAGTC-ACAAACATATTCAAGGCTATCGATGCC 27085
Query 133818 AGATTACAAACGGCCGTCTCGTTCTCGT-CGCAATACTGGACGATCTCGGCGCAGAGGTT 133876
| ||| || ||||| |||| || || | |||| | || || || | |||||||||
Sbjct 27084 AAATTGCAGACGGCAATCTC-ATCGGGTGCCGAATATTCAACAATTTCAGTGCAGAGGTT 27026
Query 133877 GCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGATCCTTGTA 133936
|||||||||||||||||| | ||| | |||||||| | |||||| |||||| |
Sbjct 27025 GCTGCATTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCAAGAGTCCTTGAA 26966
Query 133937 TAGCATGTACGG 133948
|||||||||||
Sbjct 26965 GAGCATGTACGG 26954
>SEQ10860
Length=7223
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570
||| ||||| | | | ||||||||| | ||||||||||||||| || |||||||||
Sbjct 1453 ACCACCGCGAAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGA 1512
Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630
| ||||||| ||| || | || || || || |||| | |||||| ||||| |||||
Sbjct 1513 AAGAGTGCGCCCATCTTCCAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGG 1572
Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690
|| || || ||||| ||| || ||| || | ||| | ||| |||| |||||
Sbjct 1573 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCAATGGTATCCGACGGTTCGAC 1632
Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| | || | || || || || || ||||| || || || |||||
Sbjct 1633 CTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTGCAT 1680
>seq4983
Length=3163
Score = 109 bits (120), Expect = 5e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | || ||||| || || |||||||| ||| | || || ||| ||
Sbjct 661 CACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGACCATCTTC 720
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
| ||| ||||| ||| |||| | |||||||||||| || || || |||||||||||
Sbjct 721 CAACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTG 780
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || | |||| ||| || | | ||| ||||| | ||| | || ||
Sbjct 781 GATCTTGGCCTTGACGTTCTCGATGGTATCAGAGGGCTCAACCTCCAAGGTAATGGTCTT 840
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| |||| || |||||||| ||||||||
Sbjct 841 GCCAGTCAATGTCTTTACAAAGATCTGCAT 870
>seq4710
Length=78879
Score = 109 bits (120), Expect = 5e-19
Identities = 163/230 (71%), Gaps = 1/230 (0%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTG-TAGACTCTTTTTGAATGTTGTAATCG 118568
|||| || || | | || ||||||||| | | | ||||| || || |||||||| ||
Sbjct 8601 TACCACCACGCAGACGCAGCACCAAGTGCAAGGGTCGACTCCTTCTGGATGTTGTAGTCT 8660
Query 118569 CTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGA 118628
|| |||||| |||||| ||||| || |||||| ||||||||||||||||||| ||
Sbjct 8661 GACAGAGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCTGGG 8720
Query 118629 GGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCG 118688
|| || || ||||||||| || || || || | || | ||| || | |||
Sbjct 8721 GGGATTCCTTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTATCAGATGGCTCC 8780
Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| | ||| | || || || ||||| || || || || || |||||
Sbjct 8781 ACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATTTGCAT 8830
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433586628664660
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |