Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq61 158 1e-33 SEQ10860 109 5e-19 seq4983 109 5e-19 seq4710 109 5e-19 >seq61 Length=55249 Score = 158 bits (174), Expect = 1e-33 Identities = 481/732 (66%), Gaps = 26/732 (4%) Strand=Plus/Minus Query 133221 TGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAAC 133280 || || ||||| | ||||| |||| | |||||| ||| || | || || || || Sbjct 27663 TGATTTACCACATTGAACTCTCCGGACAAAACGCGCCTGGTGTAAATGTTTGAAGTATAC 27604 Query 133281 GGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCC 133340 || || || || || || || || | ||||| || || | ||||||||||| || Sbjct 27603 GGCTCAAAGGACTCATTATTACCCATGATCTGGGCAGTAGATGCCGTGGGCATTGGAGCT 27544 Query 133341 ACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCC 133400 || | || |||||||| ||||| | || || || || | | | | |||| ||| Sbjct 27543 ACAAGCAGCGAGTTTCTAACGCCATGCTCTTTGATTTTCAATTTTAGAGCAGTCCAATCC 27484 Query 133401 CACAGA-TTGTTGGAATGATAGACGCCGTTCTCGTCGT-CGTAGTTGTGAAAATGCAAAA 133458 || || |||| || || ||| ||| | || | || | |||| || Sbjct 27483 CAAAGGCTTGTGGG--TG-----------TCTTGTCCCACATA-TCGT---ACTGCAGAA 27441 Query 133459 TACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCCAGCT 133518 | ||| |||||||||||| | | ||| | ||||||||| |||| ||| ||||||| Sbjct 27440 TTCCCTTGCTCACCGGACAACCAGCGTAGGTTTCATAGGGACCGTCCTTTTGAGCCAGCT 27381 Query 133519 CGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGATTGAATAGTTGACGAACC 133578 | || || ||||| | || || |||| |||||||| ||| | |||| || Sbjct 27380 CACAACTGGCCTCAAGGGCACCATAGTAGATGGTTTCGAAGATCTGCTGATTGAGCAATA 27321 Query 133579 TGGCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGGCCAAACCCTGT 133637 ||| | ||| || || |||| || || | |||| || |||||||| || ||||| Sbjct 27320 CGGCTTTGTCACTCTCATAGG-GAAAACGCATCAGAATTAAGGCGTCGGCAAAGCCCTGA 27262 Query 133638 ATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGGGATAG 133697 | ||| | ||| ||||| |||||| || |||| ||| | ||||| | |||||| Sbjct 27261 ACGCCAATGCCAATGGGACGATGTCTTAAATTGGATTTCTTTGCCTCGGGCAGCGGATAG 27202 Query 133698 TGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAATGTTTCAGC 133757 | |||| || ||||| ||||| | ||| | | || | ||||||| | | ||||| Sbjct 27201 TAATTGATATCAATGATTTTGTTCAAATTTCTGGTGACAGTTTTAGTAACTTCCTTCAGT 27142 Query 133758 AAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGCAATACTGGCT 133817 | || ||||| || | || ||| || || | || | ||| || || Sbjct 27141 TTCTTGAAATCGAATGTTTT--CTCTGAAGTC-ACAAACATATTCAAGGCTATCGATGCC 27085 Query 133818 AGATTACAAACGGCCGTCTCGTTCTCGT-CGCAATACTGGACGATCTCGGCGCAGAGGTT 133876 | ||| || ||||| |||| || || | |||| | || || || | ||||||||| Sbjct 27084 AAATTGCAGACGGCAATCTC-ATCGGGTGCCGAATATTCAACAATTTCAGTGCAGAGGTT 27026 Query 133877 GCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGATCCTTGTA 133936 |||||||||||||||||| | ||| | |||||||| | |||||| |||||| | Sbjct 27025 GCTGCATTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCAAGAGTCCTTGAA 26966 Query 133937 TAGCATGTACGG 133948 ||||||||||| Sbjct 26965 GAGCATGTACGG 26954 >SEQ10860 Length=7223 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| ||||| | | | ||||||||| | ||||||||||||||| || ||||||||| Sbjct 1453 ACCACCGCGAAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGA 1512 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||||||| ||| || | || || || || |||| | |||||| ||||| ||||| Sbjct 1513 AAGAGTGCGCCCATCTTCCAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGG 1572 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || || ||||| ||| || ||| || | ||| | ||| |||| ||||| Sbjct 1573 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCAATGGTATCCGACGGTTCGAC 1632 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | || | || || || || || ||||| || || || ||||| Sbjct 1633 CTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTGCAT 1680 >seq4983 Length=3163 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||| || || |||||||| ||| | || || ||| || Sbjct 661 CACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGACCATCTTC 720 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| ||||| ||| |||| | |||||||||||| || || || ||||||||||| Sbjct 721 CAACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTG 780 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| ||| || | | ||| ||||| | ||| | || || Sbjct 781 GATCTTGGCCTTGACGTTCTCGATGGTATCAGAGGGCTCAACCTCCAAGGTAATGGTCTT 840 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||| || |||||||| |||||||| Sbjct 841 GCCAGTCAATGTCTTTACAAAGATCTGCAT 870 >seq4710 Length=78879 Score = 109 bits (120), Expect = 5e-19 Identities = 163/230 (71%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTG-TAGACTCTTTTTGAATGTTGTAATCG 118568 |||| || || | | || ||||||||| | | | ||||| || || |||||||| || Sbjct 8601 TACCACCACGCAGACGCAGCACCAAGTGCAAGGGTCGACTCCTTCTGGATGTTGTAGTCT 8660 Query 118569 CTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGA 118628 || |||||| |||||| ||||| || |||||| ||||||||||||||||||| || Sbjct 8661 GACAGAGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCTGGG 8720 Query 118629 GGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCG 118688 || || || ||||||||| || || || || | || | ||| || | ||| Sbjct 8721 GGGATTCCTTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTATCAGATGGCTCC 8780 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| | ||| | || || || ||||| || || || || || ||||| Sbjct 8781 ACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATTTGCAT 8830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433586628664660